PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G33138
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 317aa    MW: 35693.4 Da    PI: 4.5253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G33138genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33e-121447135
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35
                     +g+WT+eEd++lvd+++++G g+W+t ++  g g+
      Ro03_G33138 14 KGPWTPEEDQKLVDYIQKHGYGNWRTLPKNAG-GL 47
                     79***************************999.65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MGRAPCCDKN GLKKGPWTPE EDQKLVDYIQ KHGYGNWRTL PKNAGGLLLL LVCLEEPITK  60
SRTTGTPTFG RGFSEWESIR PRLDLLDFSS ILYNSSHHHH QVNFSRLLGM QQMGVNPELL  120
RLATSLLSSH RESNSNFFIQ NGQQQQLCNP QNDQIPVQLV QSSQLQEPFQ ENVPVCTTLD  180
TSSIPFAQEV QPSNLTDFSS QNCQISEWQS NGEAPSNFTE NQYVQLPSLT YYDGSSDHQI  240
IMDPSPETSN LYSNNSNNQN FSFTSVFSTP SSSPTPLNSN STTYFNSGTE DERESYCSNM  300
LKFDIPDILD VTDFIHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-30MYB family protein