PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G27077

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 420aa MW: 45979 Da PI: 7.0017

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G27077	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	355	400	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Ro03_G27077 355 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 400 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MESDLQQQHH KPQQHMNSSL LRYRSAPSSY FANVLDTEYN EPFFNRAASP ETEGILARFM 60 TNQGGDGGGG VTEEIVSHHK VTANQQPQFL VPKVDTEAGM IQQHQQQQQS HMNNYSSQGF 120 YQIPSPKPPL PNQNLTSSNE GTAAAYQMGS NHLPPMKTGG VTHSNLIRHS SSPAGLFSNI 180 NIDVAGYAAL RGMGNFGASN STNEEASFSP ASRLKNFSSG PPPSTSGLMS PISEIGEKRM 240 RSNNQDATGG GFGEGRGNNY VSGFPIGSWE ESPLLADDII GSTGFRDDDD DVKAITGLSA 300 SETQNMDVRS RPLAHHLSLP KTSAEMAVIE NFMQFQDSVP CKIRAKRGCA THPRSIAERV 360 RRTRISERMR KLQELVPNMD KQTNTADMLD LAVDYIKDLQ SQVQTLSQTR AKCTCSNKQQ

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MESDLQQQHH KPQQHMNSSL LRYRSAPSSY FANVLDTEYN EPFFNRAASP ETEGILARFM  60
TNQGGDGGGG VTEEIVSHHK VTANQQPQFL VPKVDTEAGM IQQHQQQQQS HMNNYSSQGF  120
YQIPSPKPPL PNQNLTSSNE GTAAAYQMGS NHLPPMKTGG VTHSNLIRHS SSPAGLFSNI  180
NIDVAGYAAL RGMGNFGASN STNEEASFSP ASRLKNFSSG PPPSTSGLMS PISEIGEKRM  240
RSNNQDATGG GFGEGRGNNY VSGFPIGSWE ESPLLADDII GSTGFRDDDD DVKAITGLSA  300
SETQNMDVRS RPLAHHLSLP KTSAEMAVIE NFMQFQDSVP CKIRAKRGCA THPRSIAERV  360
RRTRISERMR KLQELVPNMD KQTNTADMLD LAVDYIKDLQ SQVQTLSQTR AKCTCSNKQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	2e-77	bHLH family protein