PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G22597

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 448aa MW: 49246.3 Da PI: 6.851

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G22597	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.4e-06	339	377	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Ro03_G22597 339 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 377 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MADEFQTTGN WWDSSRNRFE TGASPPSSSL NSLGSFGWQP DMVEIKARSS MDSGSVSGTT 60 SMVFHDTQKL QGSDSASGGD PNSHMMGLGL NSQATDWNQT LFRGEKAQSS FRSILQENMN 120 SNASFQQETH DQQQLQWRDK LFTGSSGEMS RGFSLDQTQF SPQYSSGEST VTCQGLPTSF 180 QMDSAALYGT SPSTILQGLL GSPHDHNQPQ PPSPSINFPY QANYGINSTE LLPSWSNKFS 240 QFLRTSPPKH PSNSPHSHLQ FSNTATFWNA PHEAAMKDVR PTFFPSLQPQ FPTAGFDEKP 300 KNISEVHQDS GVVVKKSGSE AASKRPRNET SSTLPAFKVR KEKMGDRITA LQQLVSPFGK 360 TDTASVLSEA IEYIKFLHEQ VSVLSTPYMK SGAAIQHQQK SDKSKDPDGP KQDLRSRGLC 420 LVPVSSTFPA THETTVDFWT PTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MADEFQTTGN WWDSSRNRFE TGASPPSSSL NSLGSFGWQP DMVEIKARSS MDSGSVSGTT  60
SMVFHDTQKL QGSDSASGGD PNSHMMGLGL NSQATDWNQT LFRGEKAQSS FRSILQENMN  120
SNASFQQETH DQQQLQWRDK LFTGSSGEMS RGFSLDQTQF SPQYSSGEST VTCQGLPTSF  180
QMDSAALYGT SPSTILQGLL GSPHDHNQPQ PPSPSINFPY QANYGINSTE LLPSWSNKFS  240
QFLRTSPPKH PSNSPHSHLQ FSNTATFWNA PHEAAMKDVR PTFFPSLQPQ FPTAGFDEKP  300
KNISEVHQDS GVVVKKSGSE AASKRPRNET SSTLPAFKVR KEKMGDRITA LQQLVSPFGK  360
TDTASVLSEA IEYIKFLHEQ VSVLSTPYMK SGAAIQHQQK SDKSKDPDGP KQDLRSRGLC  420
LVPVSSTFPA THETTVDFWT PTFGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-84	bHLH family protein