PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G17727

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

EIL

Protein Properties

Length: 452aa MW: 50711.6 Da PI: 5.494

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G17727	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	174.3	1.3e-53	37	174	1	139
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 eel++rmwkd+++lkr+ke++k + + +a++++k +++++qarrkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+gasd++raWWkek Ro03_G17727 37 EELERRMWKDRIKLKRIKEKQKLE--A-LQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEK 131 8************999998864..3.445899************************************************************ PP XXXXXXXXXXXXXX.....XXXXXXXXXXXXX....XX----STTS CS EIN3 99 vefdrngpaaisky.....qaknlilsgesslqtersseshslsel 139 v+fd+ngpaai++ k+li +g+ s+ + + l+++ Ro03_G17727 132 VKFDKNGPAAIANDydvdgTDKELIDAGSVSS---KDGRRTELMDV 174 **********99888765566665554444...44555555554 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MGDLGEVGPE ISSDIEEDLR CDNIAEKDVS DEEIDPEELE RRMWKDRIKL KRIKEKQKLE 60 ALQAAEKQKP KQTSDQARRK KMSRAQDGIL KYMLKLMEVC KARGFVYGII PEKGKPVSGA 120 SDNIRAWWKE KVKFDKNGPA AIANDYDVDG TDKELIDAGS VSSKDGRRTE LMDVEPSSNL 180 RSNTSNHVQD KQKVEKRRKR KRAPVRPSSD DQLPVTSHNE HLHVEPINAL PDINHTDVQM 240 VGFPIHENQQ ENVSITTLRP SEHDLDVQAQ LPESEFNYYA AVPSDNVIAT QGMHVGGTPM 300 LYHGVQSSEI HHGNMYNLYN PSAEYVPSHD RQQSQIVRNE PQIGPADGVP IQTLHRNGSE 360 ITGGDLPFYG KDPFQSEQDR TLDTNFGSPI DSLSLDYGGL FNSPFRLDLG MEGTSSLDDL 420 NVKGLQNVAW MPPPRDRHSP AAFATVQTRS CP

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MGDLGEVGPE ISSDIEEDLR CDNIAEKDVS DEEIDPEELE RRMWKDRIKL KRIKEKQKLE  60
ALQAAEKQKP KQTSDQARRK KMSRAQDGIL KYMLKLMEVC KARGFVYGII PEKGKPVSGA  120
SDNIRAWWKE KVKFDKNGPA AIANDYDVDG TDKELIDAGS VSSKDGRRTE LMDVEPSSNL  180
RSNTSNHVQD KQKVEKRRKR KRAPVRPSSD DQLPVTSHNE HLHVEPINAL PDINHTDVQM  240
VGFPIHENQQ ENVSITTLRP SEHDLDVQAQ LPESEFNYYA AVPSDNVIAT QGMHVGGTPM  300
LYHGVQSSEI HHGNMYNLYN PSAEYVPSHD RQQSQIVRNE PQIGPADGVP IQTLHRNGSE  360
ITGGDLPFYG KDPFQSEQDR TLDTNFGSPI DSLSLDYGGL FNSPFRLDLG MEGTSSLDDL  420
NVKGLQNVAW MPPPRDRHSP AAFATVQTRS CP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	202	KRRKRKR
2	197	202	RRKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	7e-66	EIL family protein