PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G16908
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 652aa    MW: 73613.2 Da    PI: 7.7976
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G16908genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.21.9e-1322826511373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cAea+s +++   ++l++r +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +   s++ l+++++++e++P+lkf++++a
  Ro03_G16908 282 LRQLLIACAEALSYNNMDDFEKLIERARGAVSISGEPIQRLGAYMVEGLVARKEASGTNIYRALRCREPE---SDDLLSYMHILYEICPYLKFGYMAA 376
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rL+ + e++++p+ef+  v     d++ ++L
  Ro03_G16908 377 NGAIADACRNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEAVGRRLKAISEKFKIPVEFHG-VPVFAPDVTRDML 473
                  ****************************************************999999**************************.688899******* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v++gEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl+rf+e+l+yy a+f+s++++lpr+s+eri+vE+++l+r
  Ro03_G16908 474 DVRHGEALAVNFPLQLHHTPDESVDVNNPRDGLLRIVKSLSPKVTTLVEQESNTNTTPFLNRFIETLDYYLAMFESIDVTLPRNSKERINVEQHCLAR 571
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +ivnv+aceg+er+erhe ++kW++rl++aGF+p+pls+++++ + +llr ++ + y++ee++g+++lgWkdr+Lvs+SaW
  Ro03_G16908 572 DIVNVIACEGKERVERHELFGKWKSRLMMAGFRPYPLSSYVNSVIGSLLRCYS-EHYKLEEKDGAMLLGWKDRNLVSASAW 651
                  *************************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    
MQILSSSSTL YVTVTFRTNL PSKYFSFSFY FSFSFLYITS EPSRRLVLLK AQRVEESYHS  60
LKNQSWSKQR LPKTEDFSFC RRPNTPRRMK GLSYTASHPT VPSIPNRLLG SLKFDIGNSP  120
NSPFSTQFDS DTVTTLSDSQ EQHSSTENLS GVSPSPNSPF ETNSYIHRLS LSPSVDCRRD  180
SLQLSSGRAS LLQDANCSPN IKHALQELES ALMGPDEEEV TTTTTFGESS RRKGQRSMSW  240
NQERQGSHVI QRQTSFASGH WQSEKRHKVL DEASLQGFPA NLRQLLIACA EALSYNNMDD  300
FEKLIERARG AVSISGEPIQ RLGAYMVEGL VARKEASGTN IYRALRCREP ESDDLLSYMH  360
ILYEICPYLK FGYMAANGAI ADACRNEDRI HIIDFQIAQG TQWVTLLQAL AARPSGAPHV  420
RITGIDDPVS KYARGDGLEA VGRRLKAISE KFKIPVEFHG VPVFAPDVTR DMLDVRHGEA  480
LAVNFPLQLH HTPDESVDVN NPRDGLLRIV KSLSPKVTTL VEQESNTNTT PFLNRFIETL  540
DYYLAMFESI DVTLPRNSKE RINVEQHCLA RDIVNVIACE GKERVERHEL FGKWKSRLMM  600
AGFRPYPLSS YVNSVIGSLL RCYSEHYKLE EKDGAMLLGW KDRNLVSASA WH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-176GRAS family protein