PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G16158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NF-YA | ||||||||
Protein Properties | Length: 200aa MW: 21928.2 Da PI: 9.1806 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.9 | 2.9e-32 | 108 | 164 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF Ro03_G16158 108 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGCGGRF 164 69***************************9.9*************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MYGSGNSSES DDQQKHSESQ IHSSSPAPGM SHPGIPGPIQ YVAPPQIGAG HAVAPGAYPY 60 PDPYYRSIFA PYDTQPYPPQ PYGGQPTVHL QLMGIQQAGV PLPTDAVEEP VFVNAKQYHG 120 ILRRRQSRAK AESENKALKS RKPYLHESRH LHALRRARGC GGRFLNAKKD ENEQSEGNNS 180 QAIINLNSDK SERSSSDRTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 7e-54 | NF-YA family protein |