PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G15858
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 282aa    MW: 32047.5 Da    PI: 5.4225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G15858genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.9e-08162206655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++ r RR++i ++ +eL +l+P        K++ ae+L+ A +Y+k Lq
  Ro03_G15858 162 SIAARERRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYNYVKFLQ 206
                  67889******************95.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MVLNCEAPQL FDSDMTCIQQ NLEAELVGDF LQCITSDYSN PNNFLDPWYD PCNLLNLENH  60
DVGHLLPPTF LKPDMFPVQD FELYPYPKRQ KCSKEYYYPD LTPTFSNGFA PNPCSQTTYF  120
PGAFTTPVLK FQHPEVIDST TRKTSDETVV KKVEERSVSA QSIAARERRR KITEKTQELG  180
KLVPGGSKMN TAEMLTAAYN YVKFLQAQMG ILEFMGSFQE MKEATTTEEL RVVASPIIQE  240
KLFSENKCLV PKKFVEILAN HFDAQSKPSL SHKLNQLLKS SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-29bHLH family protein