PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G15842
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 543aa    MW: 61001.4 Da    PI: 4.5711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G15842genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.82.7e-1081615321374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfsh 95 
                  lv+ Ll+cAeav  +d++la++lL+++   +sp gd++qR+  +f+ +L++rl+  +  +l  +++  + + +    +e+l a++l+++++P++ f++
  Ro03_G15842 161 LVHMLLACAEAVGCRDTRLADSLLTQIWASVSPFGDSLQRVSYCFAMGLKSRLSLlHNVNLNGTFNNDAMDVSMisREEKLEAFQLLYQTTPYIAFGF 258
                  689**************************************************9955666777777666665557789999***************** PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlel 191
                  ++aN+aI +a++g+e +HiiD+++++ lQWp+Ll++LasRpeg+p +lRiTg+++   ++  ele+  + L + A++lg+ +ef+++ +  + + l+ 
  Ro03_G15842 259 MVANEAICQAAQGKENLHIIDLGMEHTLQWPSLLRTLASRPEGQPkKLRITGLVE--DHNVLELEAGMRVLVEEASSLGILIEFKMISEPvKPSLLTR 354
                  *****************************************877769********..56999************************744358999*** PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  ++L++++gEal +n++++lh+ ++es  + +   ++L+++k+l P v++vveq+a+hn++ Fl rfle+l++ysa+fdsle++lpr+s +r+k+Er  
  Ro03_G15842 355 DNLDLREGEALFINSIMHLHKYVKESRGSLK---AILQALKKLGPSVLTVVEQDANHNGPFFLGRFLESLHFYSAIFDSLEVSLPRNSPQRMKIERLH 449
                  ***********************88776666...9*************************************************************** PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++ ei+n+va eg +r+erhe++ +Wr++l++aGF+ + l+   ++qa ++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  Ro03_G15842 450 FADEIRNIVAFEGLNRVERHERADQWRRQLGRAGFQVMGLK--CTSQATMMLSVYGCDGYSLASEKGCLLLGWKGRPIMLASAWQ 532
                  *************************************9996..679**************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    
MEDFNAWLSF PIHGSLNHDL AIRRFCPARV ELEQGGGGEW EEMLNEIEYC SPSDDTTTTP  60
CLPASEVDEF VDSFINMDHC KDIDDDYQSQ EKQQSSFDYF QDGIQTFSMV DDLYGEVMMM  120
MEGDDQMEMC GSVEDFGAVD QTNVVPSVEE VSHGVDQGLH LVHMLLACAE AVGCRDTRLA  180
DSLLTQIWAS VSPFGDSLQR VSYCFAMGLK SRLSLLHNVN LNGTFNNDAM DVSMISREEK  240
LEAFQLLYQT TPYIAFGFMV ANEAICQAAQ GKENLHIIDL GMEHTLQWPS LLRTLASRPE  300
GQPKKLRITG LVEDHNVLEL EAGMRVLVEE ASSLGILIEF KMISEPVKPS LLTRDNLDLR  360
EGEALFINSI MHLHKYVKES RGSLKAILQA LKKLGPSVLT VVEQDANHNG PFFLGRFLES  420
LHFYSAIFDS LEVSLPRNSP QRMKIERLHF ADEIRNIVAF EGLNRVERHE RADQWRRQLG  480
RAGFQVMGLK CTSQATMMLS VYGCDGYSLA SEKGCLLLGW KGRPIMLASA WQVNNASSSW  540
PPP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-81GRAS family protein