PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G15828
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 190aa    MW: 22027.7 Da    PI: 4.6744
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G15828genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-17957149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+i+nk   + tfskRr+g++ KA EL+ L +ae+a+i +s+ gk+y +
  Ro03_G15828  9 KKIDNKNYLKATFSKRRKGLFRKAAELCELSGAEIAIITLSPGGKFYNF 57
                 689********************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MGRRKIEIKK IDNKNYLKAT FSKRRKGLFR KAAELCELSG AEIAIITLSP GGKFYNFGHP  60
TVDSIIARYC GEETSCSLND NHCVRHGDDE DLEGEQEREE GSTDEIDEEK EPIDGRTLSI  120
GFSKVDEEED EPIDRRMCLS IGFSHKFWWE EPIDEDMDPE TREKYIRSLK ELRNNVVWVL  180
NDRKKLPEAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-26M-type_MADS family protein