PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G13413

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 350aa MW: 38586.6 Da PI: 7.5429

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G13413	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.3	1.6e-33	194	251	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers edp++v++tYeg+Hnh+ Ro03_G13413 194 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCGVKKRVERSFEDPSTVITTYEGQHNHP 251 8********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MSDHHQEPKD LYYHDLFQYD DHGQLNVGML SNMNNPKVSG SSSPAYNNLL QGFDVPSYMN 60 TSFTEYNSLA TAFGLSSSTS DHEVFSSIDH EGSSHQKPVD NLGYLGGGGN GSSDGEILVT 120 PNSSVSSSSA EAGIEEDSGN KGKKDRQKPK GSSEDGADLH SPKKPSKIVK KKGEKKLREP 180 RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCGVKKRV ERSFEDPSTV 240 ITTYEGQHNH PIPATLRGSI NINAAHHHHA LFSPSSMYSS AAPSTSSSGP SFPQEFLFQM 300 APPQMVMRNG GGGVYSSRNV NVPQQYHQLS ADQYGLLQDV VPSMFFKQEP

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MSDHHQEPKD LYYHDLFQYD DHGQLNVGML SNMNNPKVSG SSSPAYNNLL QGFDVPSYMN  60
TSFTEYNSLA TAFGLSSSTS DHEVFSSIDH EGSSHQKPVD NLGYLGGGGN GSSDGEILVT  120
PNSSVSSSSA EAGIEEDSGN KGKKDRQKPK GSSEDGADLH SPKKPSKIVK KKGEKKLREP  180
RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCGVKKRV ERSFEDPSTV  240
ITTYEGQHNH PIPATLRGSI NINAAHHHHA LFSPSSMYSS AAPSTSSSGP SFPQEFLFQM  300
APPQMVMRNG GGGVYSSRNV NVPQQYHQLS ADQYGLLQDV VPSMFFKQEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	1e-53	WRKY family protein