PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G12849

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 767aa MW: 84581.1 Da PI: 9.972

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G12849	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	653	702	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Ro03_G12849 653 RRPFSVSEVEALVQAVEKLGTGRWRDVKIRAFenaKHRTYVDLKDKWKTL 702 678999******************99998899***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence
MKAKRSTCHD LKAHGKWVIQ MRRTGPLGGF HTPAIAEGFG DQRLRERIRK WVASEPNKSK 60 QNSGKIWGRK KMDMVLQKRL DYGFNGFQVP VTPRAPRSAR RRSAVSKRVE DNSMGAFDLL 120 ATVAGKLLLE GESSPASSHT STGKEKCTII NESCLDGDKP LKVEPSDQGS CDRKFFVSDN 180 ISQGHYQSCS SKESPVHQNE SHSVMTTSNC SERFVSDMLV GGKCKNEIGS FTSKIQAGSS 240 VYRESGECKL DGEAKVIVKD ETNKRGKVLI GTGADMCSLE DPMVWEGEPP ALVSSDSSTK 300 VPVCVDRIPQ KPIPVSRDDV KVVSRDDDEN SSGCTHPSTT TRYLRTASRI GDRRIRKILA 360 SKYWKVAPKL KDEAHSNSYM RPIYHGRKNG YKRQRSQMNM PFKKRKLFDR STVLKSDGGI 420 SSESFFDSGE KGITGNAPAS CSKMQGAKAI SSSVAGQHSS FKSRNSHVKL RIKSFRVPEL 480 FIEIPETATV GSLKKTVMDA VTAVLGGGLC VGVLLQGKKV RDDTKTLLQT GISQDDQLDS 540 LGFTLEPNAS HIPTPLCSGD SPRMLPCDVL QPLTRYPPDP TSEASLEPHM AALGSFIESD 600 HDSAPSPTDT SADKSTTDSK ALVVVPEMSA EALAVVPGNR KSKRFDIGQR RIRRPFSVSE 660 VEALVQAVEK LGTGRWRDVK IRAFENAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ 720 ELLDRVLTAH AYWSQQQAKQ QLKHPESCVL RAVRLESIGD NDAYAVL

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence

MKAKRSTCHD LKAHGKWVIQ MRRTGPLGGF HTPAIAEGFG DQRLRERIRK WVASEPNKSK  60
QNSGKIWGRK KMDMVLQKRL DYGFNGFQVP VTPRAPRSAR RRSAVSKRVE DNSMGAFDLL  120
ATVAGKLLLE GESSPASSHT STGKEKCTII NESCLDGDKP LKVEPSDQGS CDRKFFVSDN  180
ISQGHYQSCS SKESPVHQNE SHSVMTTSNC SERFVSDMLV GGKCKNEIGS FTSKIQAGSS  240
VYRESGECKL DGEAKVIVKD ETNKRGKVLI GTGADMCSLE DPMVWEGEPP ALVSSDSSTK  300
VPVCVDRIPQ KPIPVSRDDV KVVSRDDDEN SSGCTHPSTT TRYLRTASRI GDRRIRKILA  360
SKYWKVAPKL KDEAHSNSYM RPIYHGRKNG YKRQRSQMNM PFKKRKLFDR STVLKSDGGI  420
SSESFFDSGE KGITGNAPAS CSKMQGAKAI SSSVAGQHSS FKSRNSHVKL RIKSFRVPEL  480
FIEIPETATV GSLKKTVMDA VTAVLGGGLC VGVLLQGKKV RDDTKTLLQT GISQDDQLDS  540
LGFTLEPNAS HIPTPLCSGD SPRMLPCDVL QPLTRYPPDP TSEASLEPHM AALGSFIESD  600
HDSAPSPTDT SADKSTTDSK ALVVVPEMSA EALAVVPGNR KSKRFDIGQR RIRRPFSVSE  660
VEALVQAVEK LGTGRWRDVK IRAFENAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ  720
ELLDRVLTAH AYWSQQQAKQ QLKHPESCVL RAVRLESIGD NDAYAVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-134	MYB_related family protein