PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G12104
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 448aa    MW: 50603.6 Da    PI: 6.8002
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G12104genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.12.9e-113534362361
         GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn............sseelaal....k 82 
                  ++lL++cAe+vs+ d++ a++l++ ls   +sp+gd+++Rl++ f++AL+ rl      +   +++ +++ ++            +           +
  Ro03_G12104  53 RQLLISCAEFVSQLDFSSARRLISILSSSnSSPYGDSTERLVHQFVRALSLRLPTVAAAVGGVVSVAAATASSastsnslevqteV------EeealQ 144
                  799***********************99879*********************9875554443333222222222213345544431......133331 PP

         GRAS  83 l....fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTgvgspesgskeeleetgerLak 167
                       +++++P+++fshltaNqaIlea++++ +++Hi+Dfdi++G+QWp+L+qaLa+R+        ++pp+lRiT+ g+    + + l++tgerL +
  Ro03_G12104 145 ScyltLNQITPFIRFSHLTANQAILEAIDSShHAIHILDFDIKHGVQWPPLMQALAERSygsssslhHPPPMLRITATGR----DLTLLRRTGERLLR 238
                  13456************************998999************************655555544499*********....9************* PP

         GRAS 168 fAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                  fA++lg++f+f+++     +  ++ l++ +L + p+EalaVn+vl lhrll +++   +    +L+ +k+lsPk+v+++e+ea+hn++ Fl+rf+ea+
  Ro03_G12104 239 FAQSLGLTFHFRPIvllnDVAMFDYLNPTSLGLFPDEALAVNCVLYLHRLLTDDARDVH---LFLDKIKGLSPKIVTIAEREANHNNPMFLNRFIEAV 333
                  *************9654444578899*************************88877777...************************************ PP

         GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                  ++y a+fdslea+lp++s+er  vE++++grei +vva+ +++  r+ rhe++e+W+++++++GF++vpls +a +qaklllr ++ s+gy++++ ++
  Ro03_G12104 334 DHYGAVFDSLEATLPPNSRERLAVEQVWFGREIADVVAADNEQrrRQLRHERYENWEMMMRSSGFSNVPLSPFALSQAKLLLRLHYpSEGYQLHSLKD 431
                  **************************************7655522788***********************************************999 PP

         GRAS 357 slvlg 361
                  s++l 
  Ro03_G12104 432 SFFLV 436
                  99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    
MPMGSYNSHH HHQRIVTQQQ QQQDPQIHSD LQLYNQYQIA QPPLLMSRGL TSRQLLISCA  60
EFVSQLDFSS ARRLISILSS SNSSPYGDST ERLVHQFVRA LSLRLPTVAA AVGGVVSVAA  120
ATASSASTSN SLEVQTEVEE EALQSCYLTL NQITPFIRFS HLTANQAILE AIDSSHHAIH  180
ILDFDIKHGV QWPPLMQALA ERSYGSSSSL HHPPPMLRIT ATGRDLTLLR RTGERLLRFA  240
QSLGLTFHFR PIVLLNDVAM FDYLNPTSLG LFPDEALAVN CVLYLHRLLT DDARDVHLFL  300
DKIKGLSPKI VTIAEREANH NNPMFLNRFI EAVDHYGAVF DSLEATLPPN SRERLAVEQV  360
WFGREIADVV AADNEQRRRQ LRHERYENWE MMMRSSGFSN VPLSPFALSQ AKLLLRLHYP  420
SEGYQLHSLK DSFFLVFMIT FSDGMISF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-107GRAS family protein