PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G11123

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 526aa MW: 59383.9 Da PI: 7.2014

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G11123	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.5	6e-20	57	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY+ Y+ +GFsvrk+k k+ ++ + +r++vCs++g+r+++ k ++++ +r++tr++C a+l+ + k +g++ Ro03_G11123 57 QFYSYYSLAIGFSVRKNKADKN-CDQLVRRRQLVCSRQGTRRSQAPKkqkfgneenhvnpdiscqrnnKNQAPPSRKVTRCNCPARLTALLCKtKGVY 153 6***************9998.7888*********9998777789*********998766666779*********999999 PP FAR1 77 evtkleleHnHela 90 +v ++++eHnH+l+ Ro03_G11123 154 YVVEFVTEHNHDLV 167 **********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MEESPIHSSE SEHSEESPPN VCDELTDCLH YKGKKYEDLK LEDLNGVQFK SVEEIDQFYS 60 YYSLAIGFSV RKNKADKNCD QLVRRRQLVC SRQGTRRSQA PKKQKFGNEE NHVNPDISCQ 120 RNNKNQAPPS RKVTRCNCPA RLTALLCKTK GVYYVVEFVT EHNHDLVRRE HVLLEDDCKS 180 INSHPVIGSH LQCLQEQIAS KFSHDIFLLL KDQIRFESKF VIYARDELPD QSASLYNLTQ 240 YNKPERRWVV TYHGNNSTNN PSLKCSCKLF ESDGIPCCHI FAVMKALMIT VYPESLVMKR 300 WTKDAGLSTI PSSIGGFPDN AVRVARYGDM MAECAHICFA ASFSDEGYEA TMDSLRHLNI 360 RSQKFPVPVE QSIETHEDGP HKNIVKGPVI CRTKGTHTKQ PNMIDPVKTR GGRVCGFCSR 420 RGHNIWTCDL ATEARIKHPS SAPHEDINGA GDVGVDDQYP TDTLIHHLEE SRTFDFFAGY 480 DNPVNMVSGS MTLGNPNTTS LATGFVGHSF GERVSFRDST SLPHTQ

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MEESPIHSSE SEHSEESPPN VCDELTDCLH YKGKKYEDLK LEDLNGVQFK SVEEIDQFYS  60
YYSLAIGFSV RKNKADKNCD QLVRRRQLVC SRQGTRRSQA PKKQKFGNEE NHVNPDISCQ  120
RNNKNQAPPS RKVTRCNCPA RLTALLCKTK GVYYVVEFVT EHNHDLVRRE HVLLEDDCKS  180
INSHPVIGSH LQCLQEQIAS KFSHDIFLLL KDQIRFESKF VIYARDELPD QSASLYNLTQ  240
YNKPERRWVV TYHGNNSTNN PSLKCSCKLF ESDGIPCCHI FAVMKALMIT VYPESLVMKR  300
WTKDAGLSTI PSSIGGFPDN AVRVARYGDM MAECAHICFA ASFSDEGYEA TMDSLRHLNI  360
RSQKFPVPVE QSIETHEDGP HKNIVKGPVI CRTKGTHTKQ PNMIDPVKTR GGRVCGFCSR  420
RGHNIWTCDL ATEARIKHPS SAPHEDINGA GDVGVDDQYP TDTLIHHLEE SRTFDFFAGY  480
DNPVNMVSGS MTLGNPNTTS LATGFVGHSF GERVSFRDST SLPHTQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	105	RRRQLVCSRQGTRRSQAPKKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-10	FAR1 family protein