PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10631

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 324aa MW: 35319 Da PI: 7.8197

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10631	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.9	2.6e-41	118	217	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+kll ++ e++r da++slvyeA+ r+rdPvyG++gvi++lqqq+++l+ael++++ Ro03_G10631 118 PCAACKLLRRRCAEECPFSPYFSPHEPHKFSAVHKVFGASNVSKLLMEVAENQRADAANSLVYEANLRLRDPVYGCMGVISTLQQQIQSLQAELSAVR 215 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Ro03_G10631 216 SE 217 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
METSLHEFVL LPSSSYRPQP IAIARRYEDS KSDLSQHYSC ALQYSKNSSC EAQPHAPTIK 60 LYTTREIIRL DEIIGKQIIR RESDIQITSA ADQMVMMSLQ NNSFGQLPGM TTLNTITPCA 120 ACKLLRRRCA EECPFSPYFS PHEPHKFSAV HKVFGASNVS KLLMEVAENQ RADAANSLVY 180 EANLRLRDPV YGCMGVISTL QQQIQSLQAE LSAVRSEILR YKYKEATSQI VSSRDHIHPH 240 HHAAAALVSS GMVSIAAPPQ AISTSPPAAA PSSVVFSSSS STSASSLYTP STNTTGYSSL 300 TSDNIPKAGV HVSLACGFEQ HATL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-65	LBD family protein