PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10040

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 417aa MW: 45463.8 Da PI: 7.332

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10040	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.3	6.6e-35	44	148	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec....eaesssssasnss 86 a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ + ss+ +a ++ ++as+++ Ro03_G10040 44 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELEELppwnpsaqT-SSP--PvvpiSATQDTQNASHHH 138 589**************************************************************998775431.222..133443333333333222 PP TCP 87 sg.......k 89 + Ro03_G10040 139 RFsmveapvS 148 2234433330 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MGESHNNHHR PTPSSAASRL GLGIRTSSST ASEIVETRGH ILRATGRKDR HSKVCTAKGP 60 RDRRVRLAAH TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA AIDELEELPP WNPSAQTSSP 120 PVVPISATQD TQNASHHHRF SMVEAPVSSP GNRRTAMVGS GVGELVNHNS SNFLPPSMDS 180 DSIADTIKSF FPMGAATAAE TPSFHHSYPP DLLSRTSSQS QDLRLSLHPF QDPILLHHHN 240 QAHHHQNEQA FLSGTANPLG FDGSSATWTE HQQQQADLHR FQRMMTWNNA GADSNNNSGA 300 GAGGFTFNSL PLTQTQSPTL QPFLFGQTQF FSSQRGPLQS SNTPSIHAWI DHNDPSSISD 360 HHHHQMAPSI HHQSSISGMG FASGGFPGFH IPARIQGEEE HDGISDKPSS ASSNSRH

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MGESHNNHHR PTPSSAASRL GLGIRTSSST ASEIVETRGH ILRATGRKDR HSKVCTAKGP  60
RDRRVRLAAH TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA AIDELEELPP WNPSAQTSSP  120
PVVPISATQD TQNASHHHRF SMVEAPVSSP GNRRTAMVGS GVGELVNHNS SNFLPPSMDS  180
DSIADTIKSF FPMGAATAAE TPSFHHSYPP DLLSRTSSQS QDLRLSLHPF QDPILLHHHN  240
QAHHHQNEQA FLSGTANPLG FDGSSATWTE HQQQQADLHR FQRMMTWNNA GADSNNNSGA  300
GAGGFTFNSL PLTQTQSPTL QPFLFGQTQF FSSQRGPLQS SNTPSIHAWI DHNDPSSISD  360
HHHHQMAPSI HHQSSISGMG FASGGFPGFH IPARIQGEEE HDGISDKPSS ASSNSRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-105	TCP family protein