PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G08147

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

RAV

Protein Properties

Length: 373aa MW: 42597.7 Da PI: 6.9917

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G08147	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.3	2.5e-10	52	99	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl++ Ro03_G08147 52 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAAMAYDSAAIKLRK 99 789996.566899**999......44***********************97 PP
2	B3	89.1	3.5e-28	178	270	1	85
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a ++ +++ +++l+++d+ r W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D+++F+ Ro03_G08147 178 FKKELTPSDVGKLNRLVIPKKYAVKYfpcicenvEENGVDDVELVFYDKVMRAWKFRYCYWKSSQSFVFTRGWNRFVKENNLKSNDVITFYTC 270 89***************************87744445899**********************************************933 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MDDEVSSTID SSAKRKNNVV AVLGETSDSN DANFELHANK RLRHDNVVSY AKFKGVVPQQ 60 NGHWGAQIYA NHQRIWLGTF KSENEAAMAY DSAAIKLRKG NDSHRNFPWT NFTIQEPDFQ 120 NHLTTEEVIK MIRDGSYSSK FGAFVRSQTQ YQSEEIGKGT PNQIRVHRNG KIQCRQLFKK 180 ELTPSDVGKL NRLVIPKKYA VKYFPCICEN VEENGVDDVE LVFYDKVMRA WKFRYCYWKS 240 SQSFVFTRGW NRFVKENNLK SNDVITFYTC ESAELIRDEN GEATTTFSLI DVTHSEGESN 300 KCIVEEEGKL ELNLGGISSY KLQEGECKYG EDNKASVVEG KGVRLFGSSN LNWPETSTNI 360 LLEKHIVLQN SNM

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MDDEVSSTID SSAKRKNNVV AVLGETSDSN DANFELHANK RLRHDNVVSY AKFKGVVPQQ  60
NGHWGAQIYA NHQRIWLGTF KSENEAAMAY DSAAIKLRKG NDSHRNFPWT NFTIQEPDFQ  120
NHLTTEEVIK MIRDGSYSSK FGAFVRSQTQ YQSEEIGKGT PNQIRVHRNG KIQCRQLFKK  180
ELTPSDVGKL NRLVIPKKYA VKYFPCICEN VEENGVDDVE LVFYDKVMRA WKFRYCYWKS  240
SQSFVFTRGW NRFVKENNLK SNDVITFYTC ESAELIRDEN GEATTTFSLI DVTHSEGESN  300
KCIVEEEGKL ELNLGGISSY KLQEGECKYG EDNKASVVEG KGVRLFGSSN LNWPETSTNI  360
LLEKHIVLQN SNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-100	RAV family protein