PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G07974

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 488aa MW: 55918.4 Da PI: 6.8742

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G07974	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.5	7e-46	90	217	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 ppG+rF+P+d+elv +yL+kk+ +++l+ + i ev++y+++P++L +++++ +ekewyfF++rd+ky++g r+nra+ +gyWkatg dk++ s+ Ro03_G07974 90 PPGYRFNPRDDELVLYYLQKKIMEEPLPP-NRIMEVNLYRHNPETLAERYENyGEKEWYFFTPRDRKYRNGFRPNRAAGDGYWKATGADKPIRSNgVA 186 9***********************999.77**********9654444889**********************************7334 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 vg +k Lvfy+g+ pkg+kt+W+mheyr+ Ro03_G07974 187 VPVGFRKALVFYRGKPPKGNKTNWIMHEYRV 217 45*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MEAVQQSHPQ PKASVTQVAA YSTGSPSPIK QFQPTGNEAD RQASLTRTPD AIIVSSVAAE 60 ADQFSDEEEE LIHFNNNQKR EQDAFLKSFP PGYRFNPRDD ELVLYYLQKK IMEEPLPPNR 120 IMEVNLYRHN PETLAERYEN YGEKEWYFFT PRDRKYRNGF RPNRAAGDGY WKATGADKPI 180 RSNGVAVPVG FRKALVFYRG KPPKGNKTNW IMHEYRVSDS PPPTKRTEND MRLDNWVLCR 240 IYKKADSKSS KSQNRNHEED PAEEIISISP PKNIETEMNN HFDNTQALDS EKAYLCTTVH 300 PPLESDRAYR NYAYPFRGGR PMCFNNNMLH QNRFQSAALN SGNNYRNMSQ MQPVCGTPSP 360 MYFSDKKCGV QFSDQKFTMQ PVTPESMAYH QYSDQKCAMQ FSDQKCIVQP VDAFDIGHPS 420 MPSFSDQKST HQELGKPPSL SPPDQGLQYV EESNEDHHLI LCLSKTFHGP DPVAMFWCTV 480 KQSLTATE

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MEAVQQSHPQ PKASVTQVAA YSTGSPSPIK QFQPTGNEAD RQASLTRTPD AIIVSSVAAE  60
ADQFSDEEEE LIHFNNNQKR EQDAFLKSFP PGYRFNPRDD ELVLYYLQKK IMEEPLPPNR  120
IMEVNLYRHN PETLAERYEN YGEKEWYFFT PRDRKYRNGF RPNRAAGDGY WKATGADKPI  180
RSNGVAVPVG FRKALVFYRG KPPKGNKTNW IMHEYRVSDS PPPTKRTEND MRLDNWVLCR  240
IYKKADSKSS KSQNRNHEED PAEEIISISP PKNIETEMNN HFDNTQALDS EKAYLCTTVH  300
PPLESDRAYR NYAYPFRGGR PMCFNNNMLH QNRFQSAALN SGNNYRNMSQ MQPVCGTPSP  360
MYFSDKKCGV QFSDQKFTMQ PVTPESMAYH QYSDQKCAMQ FSDQKCIVQP VDAFDIGHPS  420
MPSFSDQKST HQELGKPPSL SPPDQGLQYV EESNEDHHLI LCLSKTFHGP DPVAMFWCTV  480
KQSLTATE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	2e-65	NAC family protein