PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G07491

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 477aa MW: 52806.1 Da PI: 8.992

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G07491	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	58	78	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Ro03_G07491 58 CEICNKGFQRDQNLQLHRRGH 78 *******************88 PP
2	zf-C2H2	12	0.00067	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Ro03_G07491 133 WKCEKCSKKYAVQSDWKAHSKIC 155 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
QVMMSSEDGL SVPSTISRGF LHQEPNPTTN PNPNTTNQAL KRKRNLPGTP GKYCIFLCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLKQRSKL EVIRKKVYVC PEKSCVHHEP SRALGDLTGI 120 KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR KDSFVTHRAF 180 CDALAAEESA RFGSTSTTTN MNIPSFINGS ITHNHQHQQP RNIPHFLPIF QHQQQPEYSG 240 SDQLSAANLG LPEMVQTVSS MDMFGQSSSQ NQWLNKFPEA SFTNGNLSIS SLMPRGLKEE 300 EDSKANLNLS GSMSSSSFYN NNESPSHMSA TALLQKAAQM GSTTSNNDDV VPAAFGFMNS 360 SPYSHNKNDD NFNVLLNSLS SSTQIGDGSS SLFSTSFLSS KINHLDHMMN MPLASSSTTT 420 VNETEKSRLT RDFLGVGGIT RVPFFQQDLG AASLASMGSA MDHMTQYSSS TSGATQQ

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

QVMMSSEDGL SVPSTISRGF LHQEPNPTTN PNPNTTNQAL KRKRNLPGTP GKYCIFLCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLKQRSKL EVIRKKVYVC PEKSCVHHEP SRALGDLTGI  120
KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR KDSFVTHRAF  180
CDALAAEESA RFGSTSTTTN MNIPSFINGS ITHNHQHQQP RNIPHFLPIF QHQQQPEYSG  240
SDQLSAANLG LPEMVQTVSS MDMFGQSSSQ NQWLNKFPEA SFTNGNLSIS SLMPRGLKEE  300
EDSKANLNLS GSMSSSSFYN NNESPSHMSA TALLQKAAQM GSTTSNNDDV VPAAFGFMNS  360
SPYSHNKNDD NFNVLLNSLS SSTQIGDGSS SLFSTSFLSS KINHLDHMMN MPLASSSTTT  420
VNETEKSRLT RDFLGVGGIT RVPFFQQDLG AASLASMGSA MDHMTQYSSS TSGATQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	96	KLKQRSKLEVIRKK
2	85	98	KLKQRSKLEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	4e-83	C2H2 family protein