PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G07443
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 306aa    MW: 34490.6 Da    PI: 8.7748
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G07443genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA611.4e-19237270134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Ro03_G07443 237 CTHCAVTKTPQWREGPLGPKTLCNACGVRYRSGR 270
                  *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MTAVSADVTK LPKRESTMDG LPLDDNINQL LEHFYDDDTI KALDFPMEDN EAGEDDWKTQ  60
LQRLEPYYDA NFQYLSTSYE GTSGVTAITN GGRSSLQSND CFDQKHMHLI PTHSPVSVLK  120
SQSQSSGSAQ HPRTLEPNFI NIRASEPNFV NPVKKKRTQC SRSRPANFSH RFTFPCASSN  180
SSVSDNFYRF ETFVTEKMLN PDKRKQKKKN PSLQGLGEFS ETKRCLEPGE SRETKRCTHC  240
AVTKTPQWRE GPLGPKTLCN ACGVRYRSGR LFPEYRPAAS PTFVPAVHSN SHKKVIELRN  300
KGCQGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-41GATA family protein