PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06982

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HSF

Protein Properties

Length: 510aa MW: 56663.5 Da PI: 5.2227

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06982	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.7	1.4e-36	19	110	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sws+ +nsfvv++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv++++ weF+++ F +g+k+ll+++ Ro03_G06982 19 FLNKTYDMVDDPSTDHMVSWSTGNNSFVVWNDAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVHSDR---------WEFANEGFLRGQKHLLKTVS 106 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Ro03_G06982 107 RRKP 110 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MEGIEDPAAM INSASIPPFL NKTYDMVDDP STDHMVSWST GNNSFVVWND AEFARDLLPK 60 YFKHNNFSSF VRQLNTYGFR KVHSDRWEFA NEGFLRGQKH LLKTVSRRKP AHVHSYQQPA 120 PAPATAPAPA PATAPAPAPQ VKSSQIAARV EVGNLGLEEE VESLKRDKNI LMQELVRLRQ 180 EQQATDHQLQ NVGQRVQGME QRQQQMMSFL AKAMHSPGFL SHLVQHQNES NRRITGSNKK 240 RRLPRQEDEI LVGKLSSKTL DGQIVKYQPS MNEAAKAMLR QIMKMNISPR REPSMNNPDA 300 FLIDNVPSSN EIDSRNCSRN LGVTLSEVPP TSYMTSESGF PVPCQSRATS QVQPSPYLAT 360 DCVTATQISK DNIYNFQEDT VLPELTPMHG IVPLSTVEIP NANFMASETG NTEYMDVSAA 420 LDVAMPTETD AFSPEINPDA DVSQDGESNL PGINDVFWDK FFDTDEVDLS SVVGVTKDQE 480 LQSGKGNGWD KIQHVSPIPP QQTGLQGIIG

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MEGIEDPAAM INSASIPPFL NKTYDMVDDP STDHMVSWST GNNSFVVWND AEFARDLLPK  60
YFKHNNFSSF VRQLNTYGFR KVHSDRWEFA NEGFLRGQKH LLKTVSRRKP AHVHSYQQPA  120
PAPATAPAPA PATAPAPAPQ VKSSQIAARV EVGNLGLEEE VESLKRDKNI LMQELVRLRQ  180
EQQATDHQLQ NVGQRVQGME QRQQQMMSFL AKAMHSPGFL SHLVQHQNES NRRITGSNKK  240
RRLPRQEDEI LVGKLSSKTL DGQIVKYQPS MNEAAKAMLR QIMKMNISPR REPSMNNPDA  300
FLIDNVPSSN EIDSRNCSRN LGVTLSEVPP TSYMTSESGF PVPCQSRATS QVQPSPYLAT  360
DCVTATQISK DNIYNFQEDT VLPELTPMHG IVPLSTVEIP NANFMASETG NTEYMDVSAA  420
LDVAMPTETD AFSPEINPDA DVSQDGESNL PGINDVFWDK FFDTDEVDLS SVVGVTKDQE  480
LQSGKGNGWD KIQHVSPIPP QQTGLQGIIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-116	HSF family protein