PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06537

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 436aa MW: 48690.9 Da PI: 7.1379

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06537	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.1	2.8e-17	133	230	1	96
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k+l++sdv+++gr+vlpkk ae++ +++ +e+++l+++d s+++W +k++y +++s++yv++ ++ +Fv++ g+++gD++ ++ ++++++l+ Ro03_G06537 133 FRKELKNSDVGSLGRIVLPKKEAEKYlpSLSDKEGIELMIKDaFSNQEWGLKYKYwtNNNSRMYVFE-NTGDFVRQSGVEVGDSIHLY--EDESKNLY 227 889***********************77777999**7888***99888888889999.*****************9..55777777 PP EEE CS B3 94 vkv 96 +++ Ro03_G06537 228 ISI 230 765 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MEKFRPPSTP STTTTSSSSS FSTLDSSSSL SYYYPAVQNL PPPPNPYCPY PPPICPSAVP 60 SANEARAARE ERRMARQRRI VILRRRNAAR AVAVSSKMAG KRVTSVSGSD TQNNEQDLFP 120 FCTPDNKKLR LLFRKELKNS DVGSLGRIVL PKKEAEKYLP SLSDKEGIEL MIKDAFSNQE 180 WGLKYKYWTN NNSRMYVFEN TGDFVRQSGV EVGDSIHLYE DESKNLYISI GKVPPRPVHA 240 AKPSLYQQRN YTITKDNASN SSGSHAIAAN TAVSNYTKST NEDNLINQEK NANPNVNNNN 300 KTHAEVTSTC TYNEARTEED ESSSAVLLQQ QHREQLVETN NMVTLFTDHA SSYRQSEEAS 360 NNSNNDVTRQ FQTSSTQPVM AGILGASSSA SSSRSIVKMV EDDFDDCYKG LGTLPEVDRF 420 EHCLLDCNYI MKDDKT

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MEKFRPPSTP STTTTSSSSS FSTLDSSSSL SYYYPAVQNL PPPPNPYCPY PPPICPSAVP  60
SANEARAARE ERRMARQRRI VILRRRNAAR AVAVSSKMAG KRVTSVSGSD TQNNEQDLFP  120
FCTPDNKKLR LLFRKELKNS DVGSLGRIVL PKKEAEKYLP SLSDKEGIEL MIKDAFSNQE  180
WGLKYKYWTN NNSRMYVFEN TGDFVRQSGV EVGDSIHLYE DESKNLYISI GKVPPRPVHA  240
AKPSLYQQRN YTITKDNASN SSGSHAIAAN TAVSNYTKST NEDNLINQEK NANPNVNNNN  300
KTHAEVTSTC TYNEARTEED ESSSAVLLQQ QHREQLVETN NMVTLFTDHA SSYRQSEEAS  360
NNSNNDVTRQ FQTSSTQPVM AGILGASSSA SSSRSIVKMV EDDFDDCYKG LGTLPEVDRF  420
EHCLLDCNYI MKDDKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28300.1	9e-39	B3 family protein