PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06507

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LSD

Protein Properties

Length: 171aa MW: 18997 Da PI: 8.1539

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06507	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.9	1.6e-13	33	57	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV Ro03_G06507 33 CGSCRRLLKYPQGAKHVQCSCCQTV 57 ************************9 PP
2	zf-LSD1	45.4	1.3e-14	94	118	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GApsVRC++C +V Ro03_G06507 94 CGSCTTLLMYPYGAPSVRCSSCSFV 118 **********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
METQVQVDGA PLPEPQSTAS QPPLPSEIAQ MVCGSCRRLL KYPQGAKHVQ CSCCQTVNFV 60 LEGYSYRGFR NYCQSPFYAL SSVLNAHQVG QVKCGSCTTL LMYPYGAPSV RCSSCSFVTE 120 VGAGIKDCGD DLKIVWIYLL YVHMNTTCAR HGLFNKDNQL VHRILFIKQL M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-29	LSD family protein