PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G06475
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Dof
Protein Properties Length: 289aa    MW: 32079.5 Da    PI: 9.2056
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G06475genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.83.7e-3643103262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  + ++lkcprC+stntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGg  rknk+++
  Ro03_G06475  43 QPEQLKCPRCESTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGHGRKNKRTR 103
                  56899*****************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MGLSTKQVSS DGLDWSQTLL QAQSFELPKP PVARRQQQQN QEQPEQLKCP RCESTNTKFC  60
YYNNYNKSQP RHFCRACKRH WTKGGTLRNV PVGGHGRKNK RTRKSSSSSS AVKTTANDAS  120
TNATTTRLNN TNLAFDITDG VQRLNTHLAI DGEQRLNTHM GVLLPQQNLI TSSELDNHIF  180
SSPSGLSTTT KPFNFLQGGR AQVVSFPFSS SSTSSSFDTI STSFQSPIVY NYPQEFKVME  240
EPTITSIMPS TTSTIPQPNN PSAGIYTSNN DWNWEDIETL VSTDLNKGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.25e-30Dof family protein