PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06270

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 718aa MW: 78643 Da PI: 6.2554

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06270	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.2	5e-07	294	314	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg Ro03_G06270 294 PCPEFRK-GTCRQGDACEYAHG 314 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence
MILLGKRLSC DRCRPISMCS GSKRKPSSTD SIMEHEKQEG MRYSFSILLE LAAFDDLDGF 60 KSAVEEDGHV VDEASYWYGR RIGSKKMGFE ERTPLMIAAM FGSMNVLNYI LQTCQVDVNS 120 ACGSDRATAL HCAAAGGSAA SAEVVKLLLA ASADASSFDV NGNQAGDLIA PAYSSAFNSR 180 KKALQVMLKG VSGLEEAFDF SEQMVSETEG QDQQEITTPR ASKDGTERKE YPVDLSLPDI 240 KNGIYSTDEF RMYTFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPEFRK 300 GTCRQGDACE YAHGIFECWL HPAQYRTRLC KDETGCTRRV CFFAHKIEEL RPLYASTGSA 360 VPSPRSFSAG ASMDMGSLSP LSLNSPSVLI PSVSTPPMTP TGASSPMNGN MWQNQPNIAP 420 PTLQLQGSRL KSTLSARDMD LDMEFLSLEN HRRRLRLIDE LSSPSSSWNN GVSSPSAFAA 480 SGNRIGELNR IGGVRPTNLE DAFGSIDPAM LPQLQGLSRD TTASQLQSPT GIQMRQNMNM 540 QLRSSYSGSP SSSPVRGSPL HGFDASSAAA LLSSRSAAFA KQRSQSFIER SAATQNYGFS 600 SPADSGTLKP SNLSNWGSPN GKLDWGIQGE ELNKLRKSAS FGYRNNGGNF STVDEPDVSW 660 VNTLVKDAPP PSRPGPLGFE DQQQQQQQCH LDNGDSEILP AWVEQLYLEQ EQMFSIIQ

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence

MILLGKRLSC DRCRPISMCS GSKRKPSSTD SIMEHEKQEG MRYSFSILLE LAAFDDLDGF  60
KSAVEEDGHV VDEASYWYGR RIGSKKMGFE ERTPLMIAAM FGSMNVLNYI LQTCQVDVNS  120
ACGSDRATAL HCAAAGGSAA SAEVVKLLLA ASADASSFDV NGNQAGDLIA PAYSSAFNSR  180
KKALQVMLKG VSGLEEAFDF SEQMVSETEG QDQQEITTPR ASKDGTERKE YPVDLSLPDI  240
KNGIYSTDEF RMYTFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPEFRK  300
GTCRQGDACE YAHGIFECWL HPAQYRTRLC KDETGCTRRV CFFAHKIEEL RPLYASTGSA  360
VPSPRSFSAG ASMDMGSLSP LSLNSPSVLI PSVSTPPMTP TGASSPMNGN MWQNQPNIAP  420
PTLQLQGSRL KSTLSARDMD LDMEFLSLEN HRRRLRLIDE LSSPSSSWNN GVSSPSAFAA  480
SGNRIGELNR IGGVRPTNLE DAFGSIDPAM LPQLQGLSRD TTASQLQSPT GIQMRQNMNM  540
QLRSSYSGSP SSSPVRGSPL HGFDASSAAA LLSSRSAAFA KQRSQSFIER SAATQNYGFS  600
SPADSGTLKP SNLSNWGSPN GKLDWGIQGE ELNKLRKSAS FGYRNNGGNF STVDEPDVSW  660
VNTLVKDAPP PSRPGPLGFE DQQQQQQQCH LDNGDSEILP AWVEQLYLEQ EQMFSIIQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein