PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06239

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 515aa MW: 58185 Da PI: 8.1559

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06239	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.8e-17	145	191	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l Ro03_G06239 145 KGQWTDEEDRKLIRLVKQYGVRKWAQIAEKLV-GRAGKQCRERWHNHL 191 799***************************.***********97 PP
2	Myb_DNA-binding	58.2	1.9e-18	197	239	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+++lv+a+++ G++ W+ Ia++++ gRt++ +k++w+ Ro03_G06239 197 KDSWTEEEEKILVEAHAEVGNR-WAEIAKRIP-GRTENAIKNHWN 239 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MEGEDSAAAD HYRNHHGVYR FRNNHIQTPY QHHQLYRAGP PLTAIDRFLW SQNNAKNKER 60 FISSNGFSSF GGAIGDLQAC SNWPPSSLGE ASLDELLFID HGEAMTWPPE KNQNPNMGLK 120 EDQVKVGSKG VGKRAKKGSS VPLIKGQWTD EEDRKLIRLV KQYGVRKWAQ IAEKLVGRAG 180 KQCRERWHNH LRPDIKKDSW TEEEEKILVE AHAEVGNRWA EIAKRIPGRT ENAIKNHWNA 240 TKRRQNSRRK NKQTDTKNGS SSSSSNKPPQ PSILQNYIRS KNLNNKPNNN SSSNVTPNPS 300 NISTTTPTSS STLTQEVDPS KIPFNILLSD PSDLSSCDHS PLNIAADSYN DEELLFMQNF 360 FNNNNVHNHN QQQQPLPIDN YNNGLTASPM DTTEYRFVTS TPKPNMYTNN NFQAVHNVES 420 YIGNSEDPRP MNPTTTHLDS DLYLSYLLNG GANSSSSSTY HDHHLGSYYN MNMDLVRHQH 480 QAASSTEIRR EMDLIEMVSS ASSQFAQGTN TTSFY

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MEGEDSAAAD HYRNHHGVYR FRNNHIQTPY QHHQLYRAGP PLTAIDRFLW SQNNAKNKER  60
FISSNGFSSF GGAIGDLQAC SNWPPSSLGE ASLDELLFID HGEAMTWPPE KNQNPNMGLK  120
EDQVKVGSKG VGKRAKKGSS VPLIKGQWTD EEDRKLIRLV KQYGVRKWAQ IAEKLVGRAG  180
KQCRERWHNH LRPDIKKDSW TEEEEKILVE AHAEVGNRWA EIAKRIPGRT ENAIKNHWNA  240
TKRRQNSRRK NKQTDTKNGS SSSSSNKPPQ PSILQNYIRS KNLNNKPNNN SSSNVTPNPS  300
NISTTTPTSS STLTQEVDPS KIPFNILLSD PSDLSSCDHS PLNIAADSYN DEELLFMQNF  360
FNNNNVHNHN QQQQPLPIDN YNNGLTASPM DTTEYRFVTS TPKPNMYTNN NFQAVHNVES  420
YIGNSEDPRP MNPTTTHLDS DLYLSYLLNG GANSSSSSTY HDHHLGSYYN MNMDLVRHQH  480
QAASSTEIRR EMDLIEMVSS ASSQFAQGTN TTSFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	2e-61	MYB family protein