PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G06223
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 288aa    MW: 32502.4 Da    PI: 9.7235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G06223genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-072567343
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43
                     +WT+ E + + +a +++ ++   +W+++a++++ g+t  ++   
      Ro03_G06223 25 KWTPAENKVFENALALHDKEtpdRWHKVAAMIP-GKTVGDVLKQ 67
                     8******************9*************.***9887655 PP
2Myb_DNA-binding48.32.3e-15129173347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
      Ro03_G06223 129 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 173
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MKLETEILSP SAYFSASNWL LEETKWTPAE NKVFENALAL HDKETPDRWH KVAAMIPGKT  60
VGDVLKQYKE LEADVGKIEA GLVPIPGYGT SPFTLEWVNR HGYDGFKQTY GKRSSSTRPS  120
DHERKKGVPW TEEEHKLFLM GLKKYGKGDW RNISRNFVVT RTPTQVASHA QKYFIRQHSG  180
GKDKRRASIH DITTVNLCDT RTPSPDNKPP SPDHNSAAFP QQPNSARNPP FQWHQGGNGA  240
NMPFGQAYGN MFMSNPYGIG SFGPNKTAVH ESYYGPQNLH EKVFENNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-101MYB family protein