PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G06083
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 290aa    MW: 30762.6 Da    PI: 4.5192
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G06083genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011263286123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C+ksF +   L++H +  H
  Ro03_G06083 263 FSCGSCSKSFGSDGALQSHNKAkH 286
                  89*****************88766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MEFWGVEVKA GEPLKVVPDQ GNVVHLSQAC LGESKKAAAD SVIVYGNTGD KKLVLGHLIP  60
GQIPQLSFDL VFDEEFELSH NWKSGSVHFA EFESESEEEV EEVPLIATEN GKVELKVESA  120
KPAPAKNAVK PESSGKQKVK IEELSKADAD EDDSASDMDD SEDGSLDEDE DSSDDDDSED  180
DSDEEDEETP TPKKPESKKR AQVAASAVTP VSAKKAKIVT GTPQKTDGKK GGHTDTPHPA  240
KKGKTPATDK SKAQTPKSAG GNFSCGSCSK SFGSDGALQS HNKAKHSAGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-29C2H2 family protein