PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05429

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 369aa MW: 41411.7 Da PI: 4.6406

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05429	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl Ro03_G05429 17 RGPWSPSEDLRLISFIQKHGHDNWRALPKQAGLLRCGKSCRLRWINYL 64 89****************************99**********97 PP
2	Myb_DNA-binding	49.2	1.2e-15	70	115	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ +G++ W++Ia+ ++ gRt++++k+ w+++l Ro03_G05429 70 RGNFTKEEEDSIIKLHEVWGNK-WSKIASQFP-GRTDNEIKNVWNTHL 115 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MGGKGRAPCC DKSQVKRGPW SPSEDLRLIS FIQKHGHDNW RALPKQAGLL RCGKSCRLRW 60 INYLRPDLKR GNFTKEEEDS IIKLHEVWGN KWSKIASQFP GRTDNEIKNV WNTHLRKRLV 120 SKNSCGDDQS KELSSITSTS SSSSSSASFQ LSSGNPSVGD AVELEYQYDH ESTMANKNPN 180 EHELPNSMTI QEKLDQYSPM EVTNQVRADD VKASKALTIS SSFSSHDSSK GSSSSQGGIS 240 GPDDSLFDFT GAYETQIADK AEFEIPFESD CDFWNMLDGL VPFQSNHEPL LLQDDDQANQ 300 SSNLGLVESG KWLSYLESEL GLEQTTKTEI NDQDFFMKDA TEKLVPENYC DKLPKPAEID 360 QGMDDYFEM

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MGGKGRAPCC DKSQVKRGPW SPSEDLRLIS FIQKHGHDNW RALPKQAGLL RCGKSCRLRW  60
INYLRPDLKR GNFTKEEEDS IIKLHEVWGN KWSKIASQFP GRTDNEIKNV WNTHLRKRLV  120
SKNSCGDDQS KELSSITSTS SSSSSSASFQ LSSGNPSVGD AVELEYQYDH ESTMANKNPN  180
EHELPNSMTI QEKLDQYSPM EVTNQVRADD VKASKALTIS SSFSSHDSSK GSSSSQGGIS  240
GPDDSLFDFT GAYETQIADK AEFEIPFESD CDFWNMLDGL VPFQSNHEPL LLQDDDQANQ  300
SSNLGLVESG KWLSYLESEL GLEQTTKTEI NDQDFFMKDA TEKLVPENYC DKLPKPAEID  360
QGMDDYFEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	5e-74	MYB family protein