PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05303

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HSF

Protein Properties

Length: 372aa MW: 43258.4 Da PI: 5.8115

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05303	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.7	1.2e-35	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+++++++sws+n++sf+v+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +g+ +l+++i+ Ro03_G05303 14 FLSKTYEMVDDSSTDSVVSWSANNKSFIVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQPQLMKNIH 101 9*************************************************************9998.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Ro03_G05303 102 RRKP 105 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MDEVLGVSGS LPPFLSKTYE MVDDSSTDSV VSWSANNKSF IVWNPPEFAR DLLPKYFKHN 60 NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPQLMKNI HRRKPVHSHS VQNVQVQVQG 120 QGNSSLSEAE RKSMKDEIER LNHEKERLAV ELQRHEQERQ GMELQMQFLK DRLQHMQRQQ 180 QTMASFVARV LQKPELALNP VPQSELHERK RRFPRVDWSY DEVSIESGQM GSWQSVTRGS 240 METGKLMQLD SFLTFWEGAI LDVGQTQLQA SSNLELDESF LTENPGSMDS QEVQLEKKYS 300 DGRRNESMPG DNGKLWWNMR NVNNLTEQMG HLTPVEKTVD SCHYEFLNCY DIHTFSSNKI 360 KARIGESMQL ET

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MDEVLGVSGS LPPFLSKTYE MVDDSSTDSV VSWSANNKSF IVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPQLMKNI HRRKPVHSHS VQNVQVQVQG  120
QGNSSLSEAE RKSMKDEIER LNHEKERLAV ELQRHEQERQ GMELQMQFLK DRLQHMQRQQ  180
QTMASFVARV LQKPELALNP VPQSELHERK RRFPRVDWSY DEVSIESGQM GSWQSVTRGS  240
METGKLMQLD SFLTFWEGAI LDVGQTQLQA SSNLELDESF LTENPGSMDS QEVQLEKKYS  300
DGRRNESMPG DNGKLWWNMR NVNNLTEQMG HLTPVEKTVD SCHYEFLNCY DIHTFSSNKI  360
KARIGESMQL ET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	8e-94	HSF family protein