PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05259

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 377aa MW: 43775.8 Da PI: 7.142

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05259	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.7	3.4e-30	102	155	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F++ave LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Ro03_G05259 102 PRLRWTPQLHLSFLHAVELLGGQERATPKLVLQLMNVRGLSISHVKSHLQMYRS 155 8****************************************************7 PP
2	Myb_DNA-binding	45.6	1.6e-14	103	154	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++ +++av++lGg t+k++ + m+ g++ ++ks++q+y+ Ro03_G05259 103 RLRWTPQLHLSFLHAVELLGGQeraTPKLVLQLMNvRGLSISHVKSHLQMYR 154 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MRNELEFGDH LEEKSDEISE EQAENLSCGS SQKWSSFDLN EEASDNCNNT INLADHHERR 60 TVETDERRTL LAQGNFINNN AANNISNSSR AKVRPYVRSQ LPRLRWTPQL HLSFLHAVEL 120 LGGQERATPK LVLQLMNVRG LSISHVKSHL QMYRSKKLDG NGQVVPHKKC EHGRDHISNF 180 FSRSSSLPNK EVVQGNDLYK PMDPANIAMN PRLLLGEKRL PPLQRNSKHW RARRFASNII 240 NCSDNHNGSS QSDIMQRMMC TCRPSTRQTD EHCWNLEGLS NSRCYEQFQP PFRLEYWNKE 300 KILKYKEWMP DLELSLQSQR VVGNEINDET HDQISHEEEH YETAQGVKQT SQHYKDHQFE 360 DMNSKQEIIS TKLSLSL

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MRNELEFGDH LEEKSDEISE EQAENLSCGS SQKWSSFDLN EEASDNCNNT INLADHHERR  60
TVETDERRTL LAQGNFINNN AANNISNSSR AKVRPYVRSQ LPRLRWTPQL HLSFLHAVEL  120
LGGQERATPK LVLQLMNVRG LSISHVKSHL QMYRSKKLDG NGQVVPHKKC EHGRDHISNF  180
FSRSSSLPNK EVVQGNDLYK PMDPANIAMN PRLLLGEKRL PPLQRNSKHW RARRFASNII  240
NCSDNHNGSS QSDIMQRMMC TCRPSTRQTD EHCWNLEGLS NSRCYEQFQP PFRLEYWNKE  300
KILKYKEWMP DLELSLQSQR VVGNEINDET HDQISHEEEH YETAQGVKQT SQHYKDHQFE  360
DMNSKQEIIS TKLSLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	8e-36	G2-like family protein