PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05233

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 262aa MW: 28596.3 Da PI: 8.3038

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05233	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	75	121	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P + +K++Ka+ L ++++ +k+L Ro03_G05233 75 KNHSEAERRRRERINAHLSTLRGLVPCN-----EKMDKAALLAEVIRQVKEL 121 58***********************9.....8*********9988887 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MAFYSFNSNL GSDYSSLFDP FRYGSGGFSG GLGNGSVQLL PHSLVLDSEK DELVKAPARV 60 GKKGVSEAKA LAALKNHSEA ERRRRERINA HLSTLRGLVP CNEKMDKAAL LAEVIRQVKE 120 LKKDSLESSK GFLIPIDADE IKVEHYDNGT GDGTMSLRAS MCCEYRSELL SDLKEALGSL 180 NLKMVKAEMA TLGNRVQNVF VFTGCKEGNN DAEAYQLLAS SVHQALSSVV DKASVSPEYS 240 PRTTLPTKRR RISYFDTSSS SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	86	ERRRRE
2	248	252	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	6e-34	bHLH family protein