PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G05207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | TCP | ||||||||
Protein Properties | Length: 225aa MW: 25615.8 Da PI: 4.618 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.3 | 1.4e-34 | 79 | 168 | 3 | 87 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssa....sec..eaesssssasnsss 87 ++kdrhsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d++sk+i+WL+ +ak+aik+l ++ + ++ + c e+e+ + +++ ++ Ro03_G05207 79 ARKDRHSKVYTSKGPRDRRFRLSAQTAIEFYDVQDRLGYDRPSKAIDWLIHKAKAAIKALDDSsaT--QQpqhhQGCiaEPETVETQQH-YHE 168 79*************************************************************552..332233445542222222222.111 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MSQQRESKTE EEEEEEEEEE DDDENEAQNQ PEDAQEQADN GTKLDTNLAN LASKKPSSNN 60 GRYGRIVKVQ GGHIVRSIAR KDRHSKVYTS KGPRDRRFRL SAQTAIEFYD VQDRLGYDRP 120 SKAIDWLIHK AKAAIKALDD SSATQQPQHH QGCIAEPETV ETQQHYHERT MNNVSKEPVL 180 DYAEETLNSA SHLSEVNFME MGWLQSLMAW NYNAGDGGED YKATT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 5e-34 | TCP family protein |