PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G05170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 70aa MW: 8357.83 Da PI: 9.3634 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.2 | 5e-14 | 10 | 55 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +rie+ +r v f +R++ +lK A+E+ vL d+++ ++ifss+ ++ Ro03_G05170 10 SRIEDAARRRVCFQRRLAELLKMAQEIFVLFDVQITLVIFSSDEEM 55 59*****************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence |
MATRGNVQIS RIEDAARRRV CFQRRLAELL KMAQEIFVLF DVQITLVIFS SDEEMMFRYQ 60 ADFLVLDKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30260.1 | 2e-11 | MIKC_MADS family protein |