PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G02155
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Dof
Protein Properties Length: 311aa    MW: 34525.1 Da    PI: 7.5213
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G02155genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.63.7e-403999363
       zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                 e alkcprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Ro03_G02155 39 ELALKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 99
                 6689*****************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MDPSSGQQHQ EMQAHSLDML VCSKSQQQAD QRKPRPQPEL ALKCPRCDST NTKFCYYNNY  60
SLTQPRYFCK SCRRYWTKGG TLRNVPVGGG CRKNKRSSSK RSSQDPQQPL TPNSNPLIPS  120
LSYDSNDLSV AFARLQRSCG QLGFDDHLSI LGNPTNNSHS DILSNSSSAS PSPGFLDALR  180
TGFLETHNSN NFQNSLYYGF GSNGGNNMVG EVEMDNGVCG EIGLHPYEEM SNVATTTAVT  240
VTTMKQELSR DIETNNNNRV LWGFPWQMNN GDHHNLNMGG GSAHHEYDNS GRESWNGLAN  300
PSWHGLLPLR L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.16e-40Dof family protein