PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G02046

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 193aa MW: 21318.6 Da PI: 10.5229

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G02046	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00084	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Ro03_G02046 41 FVCKTCNREFSSFQALGGHRASH 63 89**********99999998887 PP
2	zf-C2H2	12.3	0.00053	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H Ro03_G02046 92 HECPICGLEFAVGQALGGHMRRH 114 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence
MAMKRGREDD DQTLDLVNCL MLLSNNVSFS IKKQKTSDRV FVCKTCNREF SSFQALGGHR 60 ASHNKPKLMA GGADLLQLAQ ALPSSPAKPK KHECPICGLE FAVGQALGGH MRRHRDVMNS 120 AAADWVRAAA VPVLKKSNSS KRVSCLNLDL NLAPPGYHCD LTKLSRSDHL FSVGLELRIR 180 EGSAKRRQWH GRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	1e-34	C2H2 family protein