PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G01998
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Dof
Protein Properties Length: 348aa    MW: 37726.5 Da    PI: 9.7071
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G01998genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.8e-3979139262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkks+
  Ro03_G01998  79 PETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSK 139
                  67899*****************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MVFSSIPVYL DPPNWHQQPN HPLGSGTTEN HSQLPPLPPP QFGNHVGGGA TDGSGGSGTG  60
SIRPNSMADR ARLAKMPQPE TALKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG  120
GALRNVPVGG GCRRNKKSKS SSSSRSKSPV SASSTENHQM RQTGSNPTGL INHLSQPQTQ  180
SLPFLESIQN LSRYGGAGNM GLNSFNEIQQ AQAQSTDHMG FQIGAGNNLM NLSGGLGMDQ  240
WRNLQQIPFF GNTGFESSSS TGLYPFQSTT EGVDQDSQLR TTNSRVTTQV PPVKVEDHNH  300
GVNLTRPFLG ISGNNNNNNN NNNNQFWGGN AWTDLSGTLN SSSTSHLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.27e-53Dof family protein