PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G36054

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

M-type_MADS

Protein Properties

Length: 392aa MW: 43524 Da PI: 8.8728

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G36054	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.1	1.7e-21	14	61	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ en +n qvtfskR +g++KKA+EL++LC+aeva+i+fs+ +k + Ro02_G36054 14 KKMENAINLQVTFSKRCAGLFKKASELCTLCGAEVAIIVFSPGNKAFA 61 5789**************************************998665 PP
2	SRF-TF	53.9	2.2e-17	162	202	9	49
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +vtfskRr g++KKA+ELS+L+++e+a+ii s+ k y + Ro02_G36054 162 GKVTFSKRRCGLFKKASELSTLTGVEIAMIIHSPGKKTYSF 202 68********************************9998877 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MARICKGRRK IAMKKMENAI NLQVTFSKRC AGLFKKASEL CTLCGAEVAI IVFSPGNKAF 60 AFGHPCVESI IERFEKGDPL SFPNSAGRIQ FMEEACRNET VSGLNRDLTE ANEVLSKEKK 120 RGEELRRLER AGQVENWWEK PKVELNMAQL EMLAEAMKEL KGKVTFSKRR CGLFKKASEL 180 STLTGVEIAM IIHSPGKKTY SFGHPSVQAV IDRYLGVSPC PATAEKSETE VLMENFRKIT 240 VNNLNEEYTA INEEVQREKK KGEVLNQKAR AGQAQNWYER PVEGMNKAQL DFLGSALVEL 300 RATMAQHSEV MQKKLAEMMQ HNAAIAQQAE MMQQNAVGGF EDHMQLTAAP AGPFYGGSSS 360 SHGAMIPYAA VPRPPPPSGG PWDQNLGSGR FY

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MARICKGRRK IAMKKMENAI NLQVTFSKRC AGLFKKASEL CTLCGAEVAI IVFSPGNKAF  60
AFGHPCVESI IERFEKGDPL SFPNSAGRIQ FMEEACRNET VSGLNRDLTE ANEVLSKEKK  120
RGEELRRLER AGQVENWWEK PKVELNMAQL EMLAEAMKEL KGKVTFSKRR CGLFKKASEL  180
STLTGVEIAM IIHSPGKKTY SFGHPSVQAV IDRYLGVSPC PATAEKSETE VLMENFRKIT  240
VNNLNEEYTA INEEVQREKK KGEVLNQKAR AGQAQNWYER PVEGMNKAQL DFLGSALVEL  300
RATMAQHSEV MQKKLAEMMQ HNAAIAQQAE MMQQNAVGGF EDHMQLTAAP AGPFYGGSSS  360
SHGAMIPYAA VPRPPPPSGG PWDQNLGSGR FY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	3e-43	M-type_MADS family protein