PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35511
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 293aa    MW: 33511.2 Da    PI: 8.1978
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35511genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.58.2e-2269152390
         FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  Y eY+k+vGF+vr++ ++++k++g i + +++Cs++g+r+ ++ +    + + ++tr+gCka+++ +++k+gk+++ +++  HnHel 
  Ro02_G35511  69 YIEYGKKVGFDVRIQLKNRNKKEGPIARVQYCCSRQGFRRATEGA----SYSFPVTRVGCKAQMTCQLKKNGKFMIVSFDAYHNHELI 152
                  99**************************************98777....9999*********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MEDIDCTESS DKLLGAEELN SQGEDDCDSP ITQLQINKYF FRSTGDIEMS EELKLGMEFY  60
SHESAYQSYI EYGKKVGFDV RIQLKNRNKK EGPIARVQYC CSRQGFRRAT EGASYSFPVT  120
RVGCKAQMTC QLKKNGKFMI VSFDAYHNHE LIRTPMKHML KINRCISKAQ EFHAEDEKLT  180
TYAHERSIAL LDELEEMKKN IFKSMTYVDE SLESEDSLSE SEHQEIPIVR GVKRKATVGR  240
PRGGRMKNIA EKFKRTSQKK APASRCLLMK DSSPVRANSK LQLAIAEEIL TAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-16FAR1 family protein