PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G35201

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 510aa MW: 58811.1 Da PI: 4.1658

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G35201	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	75.6	1.2e-23	11	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp Gf+F Pt++el+ +yL +kv gk+++ ++ ++e++iy++ePwd+ k ++ ++++++yfF++ +k +g++ r++ sg+Wk + ev Ro02_G35201 11 LPSGFKFLPTNQELLGYYLLNKVCGKPFKYDSRvMNEFNIYEAEPWDIWiKyggpRL-NQSEDLYFFTQLKKVFDNGTNVARKAGSGTWKGDTSGFEV 107 699**********************88865549*********733444333.256789**********************99999999 PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ k++ gl k + + pk +W+m ey+l Ro02_G35201 108 HDSkdKKNILGLCKRFHYE----PKQPDGSWIMFEYKL 141 9975455557777777664....4445579****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MAPSCVPGLN LPSGFKFLPT NQELLGYYLL NKVCGKPFKY DSRVMNEFNI YEAEPWDIWI 60 KYGGPRLNQS EDLYFFTQLK KVFDNGTNVA RKAGSGTWKG DTSGFEVHDS KDKKNILGLC 120 KRFHYEPKQP DGSWIMFEYK LDDSLIPKSC SYHDLVLCRI QKDRKRKLIE DPVTDTPQSS 180 HSKVPRVDKH DSYVMSTHEN QILNEEKQPQ QHQLVEPNRT FEDQQPTVSV ERVEQQQDQQ 240 LFPSPSYFHE PQQLLGDDLM VSSHHDKFQR VETYESMNIV QPNPNALIST HQPNCLDIPP 300 VLFDHDLFTI DQPLYQCADN EAPADSVLVT SQPPQMHCYS AANDNEEMWI TDQAQGISNI 360 MELADTTNDV LNFSLLDENV FSYSKLDDNM FNVTNPEQKN DDIAAVVDES QFDDAFWLDD 420 LLVDDSNRDA PDSELVMSQV LLMEDSEAND NDEMMRIDES HYQTQLGFTL DSNMFMELSD 480 STAHNDVIDF SFLDDNEFSH FSEIDLEHLW

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MAPSCVPGLN LPSGFKFLPT NQELLGYYLL NKVCGKPFKY DSRVMNEFNI YEAEPWDIWI  60
KYGGPRLNQS EDLYFFTQLK KVFDNGTNVA RKAGSGTWKG DTSGFEVHDS KDKKNILGLC  120
KRFHYEPKQP DGSWIMFEYK LDDSLIPKSC SYHDLVLCRI QKDRKRKLIE DPVTDTPQSS  180
HSKVPRVDKH DSYVMSTHEN QILNEEKQPQ QHQLVEPNRT FEDQQPTVSV ERVEQQQDQQ  240
LFPSPSYFHE PQQLLGDDLM VSSHHDKFQR VETYESMNIV QPNPNALIST HQPNCLDIPP  300
VLFDHDLFTI DQPLYQCADN EAPADSVLVT SQPPQMHCYS AANDNEEMWI TDQAQGISNI  360
MELADTTNDV LNFSLLDENV FSYSKLDDNM FNVTNPEQKN DDIAAVVDES QFDDAFWLDD  420
LLVDDSNRDA PDSELVMSQV LLMEDSEAND NDEMMRIDES HYQTQLGFTL DSNMFMELSD  480
STAHNDVIDF SFLDDNEFSH FSEIDLEHLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	5e-22	NAC family protein