PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G35138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 23884.6 Da PI: 8.5807 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.1e-16 | 120 | 164 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++++ ++lG+g+W+ I+++ ++Rt+ q+ s+ q+y Ro02_G35138 120 AWTEEEHRRFLEGLEKLGKGDWRGISKHYVTTRTPTQIASHAQNY 164 7*******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MGRKCLYCGN TGHNPRTCKI NTFPTQLKLK ESEKGHNSVD DLSSYSSSSS SSSAFVGKMM 60 SLCSSPSSVA YSSTESSCLI TSCFMAYEID KIVKENNLDI GHHDVSYVDN VTQEANKGVA 120 WTEEEHRRFL EGLEKLGKGD WRGISKHYVT TRTPTQIASH AQNYFLRRQD TTTTLNKRTS 180 RRRRPSLFDV GKDQLSVDIN VSNPPITEAA DRSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 5e-32 | MYB_related family protein |