PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35017
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 384aa    MW: 43706.1 Da    PI: 7.8821
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35017genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-191354344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i +++ r vtf kR++gilKKA E S+LC++++++ii+++++
  Ro02_G35017 13 IADERSRRVTFQKRKKGILKKADEFSTLCGVDACLIIYGPKQ 54
                 789999**********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MGRGGGKLNM QLIADERSRR VTFQKRKKGI LKKADEFSTL CGVDACLIIY GPKQSDRRPA  60
ELHTWPQNPD EVNRIIEKFK LSTLNKPAKK SYTLSDLLHE RKVKMDANIS KLRRDMYAPK  120
YPTWDERIND FSEHQLEELL NVLDQKLKSG KRTLINARKE PQKLLLGGNH VADVTSHNLC  180
SHMQDYAQYL GEYEDQKPSY VSMMDMHMPF SFNHPASYSQ MLQYDSDFNP MMTNPLMGYP  240
STVYDPSGAN QMIQCPAENF MMFNNVPSSS MSHYAQLIQK PMSTYTQYPM NISSISSQLG  300
ASQVKDHEDD DMIHNKMCAS VGVEGTVLDQ LLEFVLECTG VDPMACIARV GHRPQAPWVR  360
HVGATHALIK SHAHMLTVIR QMDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11728RSRRVTFQKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-24M-type_MADS family protein