PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G26236
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 943aa    MW: 107458 Da    PI: 9.4615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G26236genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.3e-111990176
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76
                 ffk+   +  +++  l++p kf ++   ++   e  tl l+d+s+ sW+v++  ++++g++++++GW++F ++n L  
  Ro02_G26236 19 FFKII--KTGFNTEDLRIPPKFRKNLlnELT--ERATLNLNDSSNCSWTVEV--SQTGGEIYFKNGWQKFIRDNSLGN 90
                 66766..66778888*******855564444..6679***************..*********************975 PP
2B341.91.7e-131852501786
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                   +p +f +++   +++  t++l++++gr+W+v +    + +++ l++GW  F  +n++++gD+++F+l+ 
  Ro02_G26236 185 AVPTDFSRNYL--PQGYYTVILKNSEGREWKVSV--VPSANTVKLSGGWAAFRCDNQINSGDICTFELHF 250
                  67888887774..336679***************..*******************************754 PP
3B355.69.9e-18317409199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffk+   +  +++  l++p  f+++  ++ ++  tl+l+++s+ sW+vk+  + +++ ++l++GW++F ++n L + +f+ F+++++++f   +++f+
  Ro02_G26236 317 FFKII--KPGFNTEHLRIPPAFLKHVVHDLTKRATLKLKNSSNCSWTVKV--STTGRDVYLKDGWQKFLRDNSLGDSEFLQFRYVRNMNF--IITIFD 408
                  66766..55667777********777555557779***************..999999****************************9999..999999 PP

                  S CS
           B3  99 k 99 
                  k
  Ro02_G26236 409 K 409
                  8 PP
4B345.21.7e-145466201797
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   +p +fa+++  +   s+  tl  + g +W+v l  +k +++y++++GW+eF +   ++ g f++F+++g+s+f  +v+++
  Ro02_G26236 546 KIPENFAKKFRDE--FSTYATLSVPGGHVWRVGL--KKADNKYWFQDGWQEFIERYSIRIGYFLIFRYEGNSSF--TVHIY 620
                  79*****999755..8899***************..**************************************..66654 PP
5B359.65.4e-19824915499
                  E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  vl ps+  + ++++lp  fae++ +g++     ++l++ +g++W v++ yr+++    l++GW eF  +n+L egD++vF+l +++e  l+v vfr 
  Ro02_G26236 824 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQSADGKQWPVRCLYRGGR--AKLSQGWYEFTVENNLLEGDVCVFELLKTKEIVLKVNVFRV 915
                  78899******************866743...5***************665555..66************************999999999999985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 943 aa     Download sequence    
MARRAFNNGG MEEKKGPTFF KIIKTGFNTE DLRIPPKFRK NLLNELTERA TLNLNDSSNC  60
SWTVEVSQTG GEIYFKNGWQ KFIRDNSLGN YEYERDMQFS IDIFDSTACK RTKFPDVRTH  120
RGQGRAKKCD TSGIHIRSCQ SNKLKEVKEE EEDYQDNKEE EAATLPNLEF PAFTSFIGQG  180
LYNVAVPTDF SRNYLPQGYY TVILKNSEGR EWKVSVVPSA NTVKLSGGWA AFRCDNQINS  240
GDICTFELHF TTLLISLRSL IGWKWRHAAA FIAFCSGILA IWTVELAQRS ISYLDTMARR  300
ASTSHNGGVE EKKEPTFFKI IKPGFNTEHL RIPPAFLKHV VHDLTKRATL KLKNSSNCSW  360
TVKVSTTGRD VYLKDGWQKF LRDNSLGDSE FLQFRYVRNM NFIITIFDKN CVERVNIADI  420
RTHEASTFPD KTKRRLGRPP IGNRRYDSAK EAAKVLKCKG GYLPRSAAAA SFKSKFPYFV  480
KVLKGWQKVA IPTHFYMEIL SSCSNCDELI LVTLEGEFTV TLVRCSDTVM LSAGWSAFRD  540
VNQLQKIPEN FAKKFRDEFS TYATLSVPGG HVWRVGLKKA DNKYWFQDGW QEFIERYSIR  600
IGYFLIFRYE GNSSFTVHIY NLTTAEINYP PNTLGSTGGS VYGNQYQVFE EMEDDDAVEI  660
LGSSPSSIVT NSMRDKLFGD NANQLTPGKN YSPPSLQNLF NGAKHNWTDA GKLHPLKVAA  720
VQEGNNSTQD KGPELKKSKK TLDEVRSCTP GEDTQSVKKT IRKRRKRDPN AQESSTQHEQ  780
EVEIRFRFYE SASARKRTVT AEERERAVNT AKTFEPINPF CRVVLRPSYL YRGCIMYLPS  840
CFAEKNLSGV SGFIKLQSAD GKQWPVRCLY RGGRAKLSQG WYEFTVENNL LEGDVCVFEL  900
LKTKEIVLKV NVFRVQEDAG FVTQPFVNQP SGQNIIQAIP LRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-122B3 family protein