PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G25590
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 280aa    MW: 32594.4 Da    PI: 9.567
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G25590genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-1714104197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffkv +p +++++  l++p kf++++ ++ + + tl+l+ +s  sW+vk+  ++++++++l++  +eF ++n ++egDf+vF+++g+++f  +++vf
  Ro02_G25590  14 FFKVILPGYSTEH--LRIPPKFLKHIRNELRAKATLSLNMSSECSWNVKV--SNTKQGVYLKDRCQEFLNDNSMNEGDFLVFTYEGKMRF--TIQVF 104
                  7888866666665..9*******888666667789***************..*********************************99999..77776 PP
2B342.51.2e-131692511399
                  TT-EE--HHH.HTT..---..--SEEEEEETTS.-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  13 sgrlvlpkkfaeeh..ggkkeesktltledesg.rsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +  ++p +f +eh       ++ ++ +   sg ++W +vkl    + ++++++kGW+eF++an++  g ++ F+l++  e ++vv+++r+
  Ro02_G25590 169 YCVYSIPTPFYREHlsA----GNYEVAFLKISGgNKWyKVKL--VPSYQTVFMSKGWSEFASANQIMLGNVCAFELVK--ENKMVVHILRN 251
                  37779*********432....556888888666566648999..*******************************986..6667***9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MVRKNGFNEK RASFFKVILP GYSTEHLRIP PKFLKHIRNE LRAKATLSLN MSSECSWNVK  60
VSNTKQGVYL KDRCQEFLND NSMNEGDFLV FTYEGKMRFT IQVFNMSCCE RVNFPTYETR  120
KESTVAKSTK RPIGKPKKHN SEADNTADEY AEIFKSMFPH YTKTIKKTYC VYSIPTPFYR  180
EHLSAGNYEV AFLKISGGNK WYKVKLVPSY QTVFMSKGWS EFASANQIML GNVCAFELVK  240
ENKMVVHILR NRVISDSQDT PSPEFYFKLC CWNVEDHGYH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-22B3 family protein