PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G25460
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 149aa    MW: 17081.8 Da    PI: 9.9001
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G25460genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.75.1e-141497493
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                  + +s+v+  + l l+  fa+++  k  +s +l++ + +g++W+v++ y+k+      t+GW++Fv+  +L++g  +vF l+++++f ++
  Ro02_G25460 14 PMHRSYVHG-DYLNLSSGFAKRYLTK--RSSELVILHVNGKTWSVNFHYEKTI---ARTAGWRGFVRGYNLEVGSACVFVLSNEDRFIFN 97
                 555555555.569**********544..5569***************666665...5599********************9987887444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    
MLLNLQINPS FVVPMHRSYV HGDYLNLSSG FAKRYLTKRS SELVILHVNG KTWSVNFHYE  60
KTIARTAGWR GFVRGYNLEV GSACVFVLSN EDRFIFNVIF YATHRSCKFH VVPCNCKESP  120
NKSSVGWMEI LIALVESTSK FCNIRGIIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-07B3 family protein