PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G24291

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 529aa MW: 58546.5 Da PI: 6.4602

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G24291	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.9	9.5e-07	275	296	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Ro02_G24291 275 FCAICGKGFKRDANLRMHMRGH 296 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MDPKDKVCAD TWANPSSGRD LRNKTCSDRP PFTNFSSHQH QQKWEDPSIL DYGIRIDPSF 60 QKIIQPSEAQ TSLPCNSNNG KNIADREDVL MNETLLASKV QDWDPRTMLS NLSFLEQKIH 120 QLQDLVHLIV GRRGQVLGRP DELVAQQQQL ITADLTSIIA QLISTAGSLL PSVKHTLSTS 180 PPSMGQLGQL GPSFIASGAG TDDCVKMQIN SGSKLSEQAN QTDLISNYGT EQSYNIEEHE 240 SKDEEDADEG ENLPPGTYEI LQLEKEEILA PHTHFCAICG KGFKRDANLR MHMRGHGDEY 300 KTPAALAKPN KESSSEPTLI KRYSCPYAGC KRNKDHKKFQ PLKTILCVKN HYKRTHCDKS 360 YTCSRCNTKK FSVIADLKTH EKHCGKDKWL CSCGTTFSRK DKLFGHIALF QGHTPAIPVD 420 ETKGAVGPSE HGEGSEAPSR VGSINFNFSS TAPGGGCGLV QNIMDVKESV DDPASYFSPL 480 NFDTCNFDGF HEFPRPTFED SESSFSFLMP GSCNYTQKTG GQSNSDKLE

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MDPKDKVCAD TWANPSSGRD LRNKTCSDRP PFTNFSSHQH QQKWEDPSIL DYGIRIDPSF  60
QKIIQPSEAQ TSLPCNSNNG KNIADREDVL MNETLLASKV QDWDPRTMLS NLSFLEQKIH  120
QLQDLVHLIV GRRGQVLGRP DELVAQQQQL ITADLTSIIA QLISTAGSLL PSVKHTLSTS  180
PPSMGQLGQL GPSFIASGAG TDDCVKMQIN SGSKLSEQAN QTDLISNYGT EQSYNIEEHE  240
SKDEEDADEG ENLPPGTYEI LQLEKEEILA PHTHFCAICG KGFKRDANLR MHMRGHGDEY  300
KTPAALAKPN KESSSEPTLI KRYSCPYAGC KRNKDHKKFQ PLKTILCVKN HYKRTHCDKS  360
YTCSRCNTKK FSVIADLKTH EKHCGKDKWL CSCGTTFSRK DKLFGHIALF QGHTPAIPVD  420
ETKGAVGPSE HGEGSEAPSR VGSINFNFSS TAPGGGCGLV QNIMDVKESV DDPASYFSPL  480
NFDTCNFDGF HEFPRPTFED SESSFSFLMP GSCNYTQKTG GQSNSDKLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein