PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G23726
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 476aa    MW: 54434.8 Da    PI: 7.0614
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G23726genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.21e-91884681373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++ Ll  A+av++++ + a + L++l + +s  gd++qR++ayf+ +Laarl+   s  y+ +  ++t+    +ee+ a+++++ vsP+++f+h+ta
  Ro02_G23726  88 LIHMLLITATAVNENQVSSALENLTELYKSVSLCGDSVQRVVAYFADGLAARLLTRKSPFYDMILKEPTH----EEEFVAFTALYRVSPYYQFAHFTA 181
                  6899***************************************************99****999888886....78889999**************** PP

         GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188
                  NqaI ea+e+e     + +HiiDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+    s +el+et++rL +f + + +v fef+ l    l+ 
  Ro02_G23726 182 NQAIIEAFEKEedknnRSLHIIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGR----SLDELRETENRLLSFSKGFrNVVFEFQGL----LQG 271
                  *********9988777789**********************99755566*********....9****************9758*******8....777 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   +l +Lr k++E++aVnlv++l ++  +++++++     Lk v  l+P +v +veqe +++  sFl rf+e+l+y++a+fdsl+  lp es er ++E
  Ro02_G23726 272 SKLINLRKKRNETIAVNLVFHLNSFN-NNLNMSD----SLKSVHLLNPSIVMLVEQEGSRSPRSFLSRFMESLHYFAAMFDSLDDCLPLESGERLSIE 364
                  77789*******************97.6666666....8*********************************************************** PP

         GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr..kvk.sdgyrveee..............sgslvlgWkdrpL 367
                  +  lg+ei++++   + + r+ ++t e+W++++e+ GF+ ++ls+k   qa+lll+  +++    ++ e++                +l lgW+dr L
  Ro02_G23726 365 KNHLGKEIKSMLNYDNHQDRKTEKTTETWKAMMESHGFEGINLSSKSKIQARLLLKirTHYcPLQFNGESNsttaagfriferddGRTLSLGWQDRYL 462
                  ******************9999********************************973223322224444223344444444445355666******** PP

         GRAS 368 vsvSaW 373
                  ++vSaW
  Ro02_G23726 463 LTVSAW 468
                  ****** PP
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    
MEDIDEEGDQ LLNLSLAIVT NSGGERMKKR KRRDENTSKL SSSSYEGCEG KIFRLLQMRE  60
LMLKLDHKKK GCSNINIVED EDGKGLQLIH MLLITATAVN ENQVSSALEN LTELYKSVSL  120
CGDSVQRVVA YFADGLAARL LTRKSPFYDM ILKEPTHEEE FVAFTALYRV SPYYQFAHFT  180
ANQAIIEAFE KEEDKNNRSL HIIDFDVSYG FQWPSLIQSL SEKATSGNRI SLRITGFGRS  240
LDELRETENR LLSFSKGFRN VVFEFQGLLQ GSKLINLRKK RNETIAVNLV FHLNSFNNNL  300
NMSDSLKSVH LLNPSIVMLV EQEGSRSPRS FLSRFMESLH YFAAMFDSLD DCLPLESGER  360
LSIEKNHLGK EIKSMLNYDN HQDRKTEKTT ETWKAMMESH GFEGINLSSK SKIQARLLLK  420
IRTHYCPLQF NGESNSTTAA GFRIFERDDG RTLSLGWQDR YLLTVSAWHC HCHSVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833KKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.18e-58GRAS family protein