PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G21865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | Whirly | ||||||||
Protein Properties | Length: 212aa MW: 23597.3 Da PI: 10.2875 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 181.3 | 1.9e-56 | 41 | 172 | 4 | 137 |
Whirly 4 ktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101 k+kaal++ +v+ptf++ldsg+l+++r+G+++l++++a++erkyd ek+q falsatev++l++l++k+sce+fhdp++++s++G+vrk+l+++P++d Ro02_G21865 41 KGKAALSLTPVLPTFTKLDSGSLVVDRRGSVMLKFMPAIGERKYDSEKRQLFALSATEVGSLISLGPKDSCELFHDPSMQSSKSGEVRKSLSIKPHAD 138 9************************************************************************************************* PP Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 G +f++l+v n+l+k+ esfsvPv+ aefav++++ Ro02_G21865 139 G--YFISLTVVNNLLKTRESFSVPVTTAEFAVIKTA 172 5..9*****************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MMKLLRLFSS RNQLSKRHAL SLDAFTQSTS FSTARQNFSA KGKAALSLTP VLPTFTKLDS 60 GSLVVDRRGS VMLKFMPAIG ERKYDSEKRQ LFALSATEVG SLISLGPKDS CELFHDPSMQ 120 SSKSGEVRKS LSIKPHADGY FISLTVVNNL LKTRESFSVP VTTAEFAVIK TACSFALPHI 180 MGWDRLTNKV PRGIEVHESK MVEPQLLDEW ER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 3e-81 | Whirly family protein |