PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G19343

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 543aa MW: 61561.5 Da PI: 8.1967

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G19343	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.9	1e-10	73	119	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fY+ Y+ GFs+rk++ k++ + +++r++vCs++g+r+e++ + Ro02_G19343 73 QFYSYYSLAKGFSTRKHRCDKNRAGTVVICRQLVCSRQGQRRESHPE 119 6****************************************998766 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MTLAGSLCNI IMDTIGVDGS TGGNSELEDM EDTQSVQEDE TQECMEYRGK PYTDLTFDDL 60 RDVEFRTVEE VDQFYSYYSL AKGFSTRKHR CDKNRAGTVV ICRQLVCSRQ GQRRESHPEE 120 DVLDKPWLKG INVSRATVHT STGPRMELER ACYLVTLHVE LFLQWGRKEI VGKDVSTGKP 180 KPAPSDCSIS PNAAPKLKRR GRKEKTKPTL AVQPTQIVRA LFKQRTRVGA VGVSKKIAKS 240 VQTPRNMVAK TVAQPILMVP HTKEDVDLMD FIYMDWRKPD VFESFVVANC EGIQVSGIDL 300 QCLRPTKLMY NVVINMFAEY MNEQGSEDWF LSAYFSGSAL GVSEHMSRED WILHTIRCCV 360 LRRFAGRIGN CRREPDIKGD IAHFYLLIVH VRARYAEILD SCPVDGKKNK RMQDARTVMR 420 MVDDVFGEDI RNGLNPPIAI GNLPFGLNGY GPRQPNCFDC GVYVIRNMQY YGHPWAAKYD 480 SKQQRASLVL ECIRHPKNEV TNLQATVNQA LEIWRGCVGT LESRQVNKSD VVKNNIPNVI 540 LDA

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MTLAGSLCNI IMDTIGVDGS TGGNSELEDM EDTQSVQEDE TQECMEYRGK PYTDLTFDDL  60
RDVEFRTVEE VDQFYSYYSL AKGFSTRKHR CDKNRAGTVV ICRQLVCSRQ GQRRESHPEE  120
DVLDKPWLKG INVSRATVHT STGPRMELER ACYLVTLHVE LFLQWGRKEI VGKDVSTGKP  180
KPAPSDCSIS PNAAPKLKRR GRKEKTKPTL AVQPTQIVRA LFKQRTRVGA VGVSKKIAKS  240
VQTPRNMVAK TVAQPILMVP HTKEDVDLMD FIYMDWRKPD VFESFVVANC EGIQVSGIDL  300
QCLRPTKLMY NVVINMFAEY MNEQGSEDWF LSAYFSGSAL GVSEHMSRED WILHTIRCCV  360
LRRFAGRIGN CRREPDIKGD IAHFYLLIVH VRARYAEILD SCPVDGKKNK RMQDARTVMR  420
MVDDVFGEDI RNGLNPPIAI GNLPFGLNGY GPRQPNCFDC GVYVIRNMQY YGHPWAAKYD  480
SKQQRASLVL ECIRHPKNEV TNLQATVNQA LEIWRGCVGT LESRQVNKSD VVKNNIPNVI  540
LDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	239	RRGRKEKTKPTLAVQPTQIVRALFKQRTRVGAVGVSKKIAK