PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G16811
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 583aa    MW: 65100.3 Da    PI: 4.7328
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G16811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.72.5e-1352095782374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++cA a+s+g++e+a++++++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e +   ss +laa+++++ev+P++kf++++aN
  Ro02_G16811 209 KQLLFDCAGALSEGNMEEASTMINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYRALKCKEPP---SSYRLAAMQVLFEVCPCFKFGFMAAN 303
                  589*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   aI ea+  e+rvHiiDfdisqG Q+++L+q+La+ p++p + R+Tgv++pes+      l+++g rL+k+Aeelgv+fef++ va+r++ +++++L+
  Ro02_G16811 304 GAIIEATRDEKRVHIIDFDISQGNQYITLIQTLAKLPGKPQHWRLTGVDDPESVqrPVGGLNTIGLRLKKLAEELGVSFEFQA-VASRTSIINPSMLD 400
                  ****************************************************99888899***********************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++pgEal+Vn+++qlh+++desvs+ ++rd++L+l ksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+fdslea +pres++r++vE+++l+r+
  Ro02_G16811 401 CRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRLAKSLRPKLVTVVEQDVNTNTTPFFPRFVEAYNYYSAVFDSLEAAIPRESQDRMNVEKQCLARD 498
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn+vaceg++r+er e ++kWr+r+ +aGF++ p+s +++++++ l+r++ ++ y+++ee g+l +gW+d++L+++SaWr
  Ro02_G16811 499 IVNIVACEGEDRIERYEVAGKWRARMAMAGFTSSPMSRSVTDSIRELIRQYCDR-YKIKEEMGALHFGWEDKSLIVASAWR 578
                  ****************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    
MSLVRPVELS ATPYRGSKLY SLKGSNDTSA LSSQTYGADK NKNMYVTDSY SSESYEFVDS  60
PTDEIARPSS STVSGSSFDQ HGSGSVSSLT TQIPFSTSYM STRLHDAYQT NIESDYMESQ  120
SPDAVSFDED KMRLKLQELE RALLDDNDVE DDGEIIGSGQ SMEIDGEWTE PIQTALLQDS  180
PKESSSSDSQ LSSISSIKEI SRISPRTPKQ LLFDCAGALS EGNMEEASTM INELRQMVSI  240
QGDPPQRIAA YMVEGLAARM AASGKFLYRA LKCKEPPSSY RLAAMQVLFE VCPCFKFGFM  300
AANGAIIEAT RDEKRVHIID FDISQGNQYI TLIQTLAKLP GKPQHWRLTG VDDPESVQRP  360
VGGLNTIGLR LKKLAEELGV SFEFQAVASR TSIINPSMLD CRPGEALVVN FAFQLHHMPD  420
ESVSTVNQRD QLLRLAKSLR PKLVTVVEQD VNTNTTPFFP RFVEAYNYYS AVFDSLEAAI  480
PRESQDRMNV EKQCLARDIV NIVACEGEDR IERYEVAGKW RARMAMAGFT SSPMSRSVTD  540
SIRELIRQYC DRYKIKEEMG ALHFGWEDKS LIVASAWRFY MTC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein