PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G16402

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 1237aa MW: 141355 Da PI: 8.3044

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G16402	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.6	2.8e-19	98	183	1	90
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f+k ++psdv k+ + l+lpk+f+++h + ++t+tle+esg+++evk+ k +r l++GW++F+++ +L gD +vF+ ++ ++f Ro02_G16402 98 FLKCMIPSDVVKNkSSLTLPKQFCQAHLPI--HDTTITLEHESGKEYEVKF--LAKYRR--LSGGWRSFCNESKLLKGDLLVFQWVRPlMKF 183 89*******99888*******544..5679***********..555556..9********************88766666 PP
2	B3	66.6	3.6e-21	408	498	1	97
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k+++ps+v + +l lpk+f+ +h + + +tled+sg+++e k+ ++++ +l++GW++F+++n+L +gD++vF+l++ +f +v + Ro02_G16402 408 FVKAMLPSNVISGFMLALPKRFCHSHlPLH---DSIITLEDKSGEQYETKF--IVQKEKSILSSGWRRFCSENKLVVGDVLVFQLVRPLKF--KVYIM 498 89*******************9996333...347***********..55666678*********************9985555..66555 PP
3	B3	46.9	4.8e-15	965	1045	1	87
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ++p +v++ l+lp +f++ h + ++ +tledesg+++++++ + + +l++GW++F+ an+L +gD +vF+l++ Ro02_G16402 965 FVKSMLPTNVTRGFFLTLPQQFCDLHlPL---HDTIVTLEDESGEEYRINF--LVGHR--ILSGGWRRFCIANKLVVGDLLVFRLVRP 1045 89*******************999533...4567***********..44443..69********************9874 PP

Sequence ? help Back to Top
Protein Sequence Length: 1237 aa Download sequence
MTPQLCARRR QFDDLILHSR PPREPLEETK ENWFKPWKWS SPLSPIPNTK RKVVAGGDPQ 60 SHKGYTCKKT KPNYHEKPSV RNQIQGILDN LEAECPFFLK CMIPSDVVKN KSSLTLPKQF 120 CQAHLPIHDT TITLEHESGK EYEVKFLAKY RRLSGGWRSF CNESKLLKGD LLVFQWVRPL 180 MKFKVYKVEA DTLIEVDASF ILLKLSLSTT TLFGIEFQIY SLIQDLLLIS LILKLLEVIE 240 NFSRVVSDDE KNTSSTIGLQ CVFRKGKGGD RRGGRALRLN MNVEEIRQER KYSQSFMLNM 300 NVEDQCLEHF SEKEDDFIAS QISRQPSFSP LVEQRKLLET QKNGFKTRTS PFTPTHDTKR 360 KVPGDHQKPQ GCKRKRTMFD NVDNPEDSSV KSHVKEMKAN LGAECPIFVK AMLPSNVISG 420 FMLALPKRFC HSHLPLHDSI ITLEDKSGEQ YETKFIVQKE KSILSSGWRR FCSENKLVVG 480 DVLVFQLVRP LKFKVYIMER HSLAEVDAAF SLLKLGACAK QTTFEGNRPM PLLKDVCQGH 540 IDQKTSVTLD SNPTLIDDAC AKQTAFGTSL SLSENANMMK DYAEGNRPVP LLKDVCQGHI 600 DQKTSVTLDS NPTEIDDEYN KEFGFNILEE VGLQIPSADF EDVENTESFT ILLNGVSINS 660 HFSEQIRNRY YDLCCSQRSF LHDHLLKSIN GKLAAEIITE TTNIANAIRA CKLSTPHAAY 720 VMWEKTLDAF EMLGMNVGFL RARLKRLLSL SCRTKQALIR KSKEAKLEQA RVKEEELTLE 780 KKNPSIANGE IGCYMLVLSM SRRKAVLWHR LARFALRINE SMFCQEIGPS WIHDLGLDSK 840 GKRWQSSQAE AYQMPMAMMV QDDKGSQSFI LSMNLEQECF DYFAQDLLED NFNSWLVEQR 900 KPLETEKNGF KTHNTLLTPT QNTKRKVPGD SQKPHCKSKR IRCAKFDDFQ VKEIQENLGA 960 ECPIFVKSML PTNVTRGFFL TLPQQFCDLH LPLHDTIVTL EDESGEEYRI NFLVGHRILS 1020 GGWRRFCIAN KLVVGDLLVF RLVRPLKFKW ETIQCVILEM FVKEIFIRQY VKEVRSNIVE 1080 GIGFPGPAAD FEDVRSLESF TILVNGVSID FLLSKQQRKN YFALCCSQSS FLHDHLLKSL 1140 DGKLAAEIII ETTNIANAIR AGELFTPHGD YAMSEKTLDA FEMLGMNVGF LRAQLRQLLS 1200 LSFKSKQSKL EQACAKEEMR TALESKYLEL KDGEKAK

Sequence ? help Back to Top

Protein Sequence Length: 1237 aa Download sequence

MTPQLCARRR QFDDLILHSR PPREPLEETK ENWFKPWKWS SPLSPIPNTK RKVVAGGDPQ  60
SHKGYTCKKT KPNYHEKPSV RNQIQGILDN LEAECPFFLK CMIPSDVVKN KSSLTLPKQF  120
CQAHLPIHDT TITLEHESGK EYEVKFLAKY RRLSGGWRSF CNESKLLKGD LLVFQWVRPL  180
MKFKVYKVEA DTLIEVDASF ILLKLSLSTT TLFGIEFQIY SLIQDLLLIS LILKLLEVIE  240
NFSRVVSDDE KNTSSTIGLQ CVFRKGKGGD RRGGRALRLN MNVEEIRQER KYSQSFMLNM  300
NVEDQCLEHF SEKEDDFIAS QISRQPSFSP LVEQRKLLET QKNGFKTRTS PFTPTHDTKR  360
KVPGDHQKPQ GCKRKRTMFD NVDNPEDSSV KSHVKEMKAN LGAECPIFVK AMLPSNVISG  420
FMLALPKRFC HSHLPLHDSI ITLEDKSGEQ YETKFIVQKE KSILSSGWRR FCSENKLVVG  480
DVLVFQLVRP LKFKVYIMER HSLAEVDAAF SLLKLGACAK QTTFEGNRPM PLLKDVCQGH  540
IDQKTSVTLD SNPTLIDDAC AKQTAFGTSL SLSENANMMK DYAEGNRPVP LLKDVCQGHI  600
DQKTSVTLDS NPTEIDDEYN KEFGFNILEE VGLQIPSADF EDVENTESFT ILLNGVSINS  660
HFSEQIRNRY YDLCCSQRSF LHDHLLKSIN GKLAAEIITE TTNIANAIRA CKLSTPHAAY  720
VMWEKTLDAF EMLGMNVGFL RARLKRLLSL SCRTKQALIR KSKEAKLEQA RVKEEELTLE  780
KKNPSIANGE IGCYMLVLSM SRRKAVLWHR LARFALRINE SMFCQEIGPS WIHDLGLDSK  840
GKRWQSSQAE AYQMPMAMMV QDDKGSQSFI LSMNLEQECF DYFAQDLLED NFNSWLVEQR  900
KPLETEKNGF KTHNTLLTPT QNTKRKVPGD SQKPHCKSKR IRCAKFDDFQ VKEIQENLGA  960
ECPIFVKSML PTNVTRGFFL TLPQQFCDLH LPLHDTIVTL EDESGEEYRI NFLVGHRILS  1020
GGWRRFCIAN KLVVGDLLVF RLVRPLKFKW ETIQCVILEM FVKEIFIRQY VKEVRSNIVE  1080
GIGFPGPAAD FEDVRSLESF TILVNGVSID FLLSKQQRKN YFALCCSQSS FLHDHLLKSL  1140
DGKLAAEIII ETTNIANAIR AGELFTPHGD YAMSEKTLDA FEMLGMNVGF LRAQLRQLLS  1200
LSFKSKQSKL EQACAKEEMR TALESKYLEL KDGEKAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	359	376	KRKVPGDHQKPQGCKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	9e-30	B3 family protein